Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LTW57_RS06705 Genome accession   NZ_CP089416
Coordinates   1370735..1371814 (+) Length   359 a.a.
NCBI ID   WP_045981231.1    Uniprot ID   -
Organism   Paracoccus marcusii strain 3501     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1365735..1376814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTW57_RS06690 (LTW57_06675) - 1366571..1367719 (+) 1149 WP_373946464.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  LTW57_RS06695 (LTW57_06680) - 1367783..1369897 (+) 2115 WP_373946465.1 ATP-binding protein -
  LTW57_RS06700 (LTW57_06685) - 1369906..1370493 (-) 588 WP_373946466.1 hypothetical protein -
  LTW57_RS06705 (LTW57_06690) recA 1370735..1371814 (+) 1080 WP_045981231.1 recombinase RecA Machinery gene
  LTW57_RS06710 (LTW57_06695) alaS 1371954..1374605 (+) 2652 WP_373946467.1 alanine--tRNA ligase -
  LTW57_RS06715 (LTW57_06700) - 1374602..1374901 (+) 300 WP_045981229.1 DUF1330 domain-containing protein -
  LTW57_RS06720 (LTW57_06705) - 1374961..1375755 (+) 795 WP_045981228.1 class II glutamine amidotransferase -
  LTW57_RS06725 (LTW57_06710) - 1375759..1376076 (-) 318 WP_252926404.1 DUF4177 domain-containing protein -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38515.86 Da        Isoelectric Point: 4.9774

>NTDB_id=636896 LTW57_RS06705 WP_045981231.1 1370735..1371814(+) (recA) [Paracoccus marcusii strain 3501]
MAQASIFDMTDKRAADKQKALDSALAQIERQFGKGSIMKLGKDNPVAEIESTSTGSLGLDIALGIGGLPKGRIIEIFGPE
SSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELLISQPDTGEQALEIVDTLVRSGAVSLVVVDSVAA
LTPKSEIEGDMGDMQMGSQARLMSQAMRKLTASIGRSNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRT
GAVKDRDEVVGNATRVKVVKNKVAPPFRQVEFDIMYGEGISKVGELIDLGVKAGVVEKSGAWYSYGDERIGQGRENAKQF
LRDRPEVAFAIEDKIRASHGLEFGVGEGSDSGDDDSLTE

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=636896 LTW57_RS06705 WP_045981231.1 1370735..1371814(+) (recA) [Paracoccus marcusii strain 3501]
ATGGCACAGGCGAGCATCTTCGACATGACGGACAAACGCGCGGCGGACAAGCAGAAGGCGCTGGACAGCGCCCTGGCCCA
GATCGAACGGCAGTTCGGCAAGGGCTCGATCATGAAGCTGGGCAAGGACAATCCCGTGGCCGAGATCGAGTCGACATCGA
CCGGGTCGCTGGGCCTGGACATCGCGTTGGGCATCGGCGGCCTGCCCAAGGGCCGGATCATCGAGATCTTCGGGCCGGAA
AGCTCGGGCAAGACGACGCTGACGCTGCATGTCGTGGCCGAGGAGCAGAAGAAGGGCGGCGTCTGCGCCTTCGTTGACGC
GGAACACGCGCTGGACCCGCAATATGCCAAGAAGCTGGGCGTGAACCTGGACGAGCTGCTGATCAGCCAGCCCGACACGG
GCGAGCAGGCGCTGGAGATCGTGGACACGCTGGTGCGGTCGGGCGCGGTCAGCCTGGTCGTAGTCGACTCGGTCGCGGCG
CTGACGCCCAAGTCCGAGATCGAGGGCGACATGGGCGACATGCAGATGGGCAGCCAGGCCCGCCTGATGAGCCAGGCCAT
GCGCAAGCTGACCGCCAGCATCGGGCGTTCGAACTGCATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCA
TGTTCGGCAACCCCGAGACCACAACCGGCGGCAACGCGCTGAAGTTCTATGCCTCGGTTCGTCTGGACATCCGTCGCACC
GGCGCGGTCAAGGACCGCGATGAGGTCGTGGGCAACGCCACCCGCGTCAAGGTGGTCAAGAACAAGGTCGCGCCCCCCTT
CCGTCAGGTCGAATTCGACATCATGTACGGAGAGGGCATCAGCAAGGTCGGCGAACTGATCGACCTTGGCGTCAAGGCCG
GCGTGGTCGAGAAGTCGGGCGCCTGGTATTCTTATGGTGACGAGCGCATCGGCCAGGGCCGCGAGAACGCCAAGCAGTTC
CTGCGCGACCGCCCCGAGGTGGCTTTTGCCATCGAGGACAAGATCCGCGCCAGCCATGGCCTGGAATTCGGCGTCGGCGA
AGGGTCGGACAGCGGCGACGACGACTCGCTGACCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

68.497

96.379

0.66
  recA Neisseria gonorrhoeae MS11

68.437

94.429

0.646
  recA Neisseria gonorrhoeae MS11

68.437

94.429

0.646
  recA Neisseria gonorrhoeae strain FA1090

68.437

94.429

0.646
  recA Pseudomonas stutzeri DSM 10701

71.739

89.694

0.643
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.651

89.415

0.641
  recA Vibrio cholerae strain A1552

71.651

89.415

0.641
  recA Ralstonia pseudosolanacearum GMI1000

72.93

87.465

0.638
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.683

91.365

0.618
  recA Acinetobacter baylyi ADP1

68.847

89.415

0.616
  recA Acinetobacter baumannii D1279779

68.847

89.415

0.616
  recA Bacillus subtilis subsp. subtilis str. 168

66.463

91.365

0.607
  recA Helicobacter pylori 26695

66.258

90.808

0.602
  recA Helicobacter pylori strain NCTC11637

66.258

90.808

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.031

90.808

0.591
  recA Streptococcus mitis SK321

61.243

94.15

0.577
  recA Streptococcus mitis NCTC 12261

60.947

94.15

0.574
  recA Streptococcus pneumoniae Rx1

60.947

94.15

0.574
  recA Streptococcus pneumoniae D39

60.947

94.15

0.574
  recA Streptococcus pneumoniae R6

60.947

94.15

0.574
  recA Streptococcus pneumoniae TIGR4

60.947

94.15

0.574
  recA Streptococcus pyogenes NZ131

59.644

93.872

0.56
  recA Streptococcus mutans UA159

59.467

94.15

0.56
  recA Lactococcus lactis subsp. cremoris KW2

59.172

94.15

0.557
  recA Latilactobacillus sakei subsp. sakei 23K

60.429

90.808

0.549
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.509

90.808

0.54