Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | MTX54_RS04980 | Genome accession | NZ_CP089307 |
| Coordinates | 995081..996142 (+) | Length | 353 a.a. |
| NCBI ID | WP_003598111.1 | Uniprot ID | A0A243PT23 |
| Organism | Lacticaseibacillus paracasei strain VHProbi F22 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 966815..1006105 | 995081..996142 | within | 0 |
Gene organization within MGE regions
Location: 966815..1006105
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MTX54_RS04840 (LT340_04840) | - | 966815..967813 (-) | 999 | WP_012490951.1 | IS30 family transposase | - |
| MTX54_RS04845 (LT340_04845) | - | 968051..969379 (-) | 1329 | WP_012491272.1 | metallophosphoesterase | - |
| MTX54_RS04850 (LT340_04850) | - | 969570..969836 (+) | 267 | WP_003564140.1 | ACT domain-containing protein | - |
| MTX54_RS04855 (LT340_04855) | - | 969885..971228 (+) | 1344 | WP_014951764.1 | PFL family protein | - |
| MTX54_RS04860 (LT340_04860) | - | 971338..972393 (+) | 1056 | WP_003569473.1 | competence protein CoiA family protein | - |
| MTX54_RS04865 (LT340_04865) | - | 972583..973218 (-) | 636 | WP_003601677.1 | DsbA family protein | - |
| MTX54_RS04870 (LT340_04870) | - | 973288..973881 (-) | 594 | WP_003601679.1 | CYTH domain-containing protein | - |
| MTX54_RS04875 (LT340_04875) | - | 974075..974746 (+) | 672 | WP_003564145.1 | GTP pyrophosphokinase family protein | - |
| MTX54_RS04880 (LT340_04880) | - | 974748..975545 (+) | 798 | WP_003564146.1 | NAD kinase | - |
| MTX54_RS04885 (LT340_04885) | - | 975545..976447 (+) | 903 | WP_012491275.1 | RluA family pseudouridine synthase | - |
| MTX54_RS04890 (LT340_04890) | - | 976556..977614 (-) | 1059 | WP_012491276.1 | FAD:protein FMN transferase | - |
| MTX54_RS04895 (LT340_04895) | - | 977771..978406 (-) | 636 | WP_003569480.1 | copper homeostasis protein CutC | - |
| MTX54_RS04900 (LT340_04900) | - | 978428..979246 (-) | 819 | WP_014566471.1 | undecaprenyl-diphosphate phosphatase | - |
| MTX54_RS04905 (LT340_04905) | - | 979449..980489 (-) | 1041 | WP_012491278.1 | lactonase family protein | - |
| MTX54_RS04910 (LT340_04910) | - | 980761..981138 (+) | 378 | WP_014566472.1 | PTS glucitol/sorbitol transporter subunit IIA | - |
| MTX54_RS04915 (LT340_04915) | rpsN | 981250..981519 (-) | 270 | WP_003564153.1 | 30S ribosomal protein S14 | - |
| MTX54_RS04920 (LT340_04920) | - | 981647..982624 (-) | 978 | WP_024109435.1 | GMP reductase | - |
| MTX54_RS04925 (LT340_04925) | - | 982864..983811 (-) | 948 | WP_003564155.1 | magnesium transporter CorA family protein | - |
| MTX54_RS04930 (LT340_04930) | - | 983877..984719 (+) | 843 | WP_012491280.1 | methyltransferase domain-containing protein | - |
| MTX54_RS04935 (LT340_04935) | trmL | 984974..985483 (+) | 510 | WP_003564157.1 | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | - |
| MTX54_RS04940 (LT340_04940) | - | 985610..986020 (+) | 411 | WP_003564159.1 | DUF1149 family protein | - |
| MTX54_RS04945 (LT340_04945) | - | 986193..988514 (+) | 2322 | WP_003604697.1 | DNA translocase FtsK | - |
| MTX54_RS04950 (LT340_04950) | - | 988523..989785 (+) | 1263 | WP_012491281.1 | pitrilysin family protein | - |
| MTX54_RS04955 (LT340_04955) | - | 989782..991074 (+) | 1293 | WP_014566474.1 | pitrilysin family protein | - |
| MTX54_RS04960 (LT340_04960) | - | 991074..991802 (+) | 729 | WP_003569514.1 | SDR family oxidoreductase | - |
| MTX54_RS04965 (LT340_04965) | - | 991889..992818 (+) | 930 | WP_003593861.1 | helix-turn-helix domain-containing protein | - |
| MTX54_RS04970 (LT340_04970) | pgsA | 992815..993408 (+) | 594 | WP_003564171.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| MTX54_RS04975 (LT340_04975) | cinA | 993783..995024 (+) | 1242 | WP_012491282.1 | competence/damage-inducible protein A | Machinery gene |
| MTX54_RS04980 (LT340_04980) | recA | 995081..996142 (+) | 1062 | WP_003598111.1 | recombinase RecA | Machinery gene |
| MTX54_RS04985 (LT340_04985) | rny | 996444..998015 (+) | 1572 | WP_003657913.1 | ribonuclease Y | - |
| MTX54_RS04990 (LT340_04990) | - | 998109..998759 (-) | 651 | WP_012491283.1 | YigZ family protein | - |
| MTX54_RS04995 (LT340_04995) | - | 998787..1000049 (+) | 1263 | WP_016379935.1 | helicase-related protein | - |
| MTX54_RS05000 (LT340_05000) | - | 1000262..1000723 (+) | 462 | WP_003583965.1 | ComF family protein | - |
| MTX54_RS05005 (LT340_05005) | raiA | 1000847..1001404 (+) | 558 | WP_003569531.1 | ribosome-associated translation inhibitor RaiA | - |
| MTX54_RS05010 (LT340_05010) | secA | 1001738..1004101 (+) | 2364 | WP_003578257.1 | preprotein translocase subunit SecA | - |
| MTX54_RS05015 (LT340_05015) | prfB | 1004226..1005342 (+) | 1117 | WP_096772597.1 | peptide chain release factor 2 | - |
| MTX54_RS05020 (LT340_05020) | ftsE | 1005419..1006105 (+) | 687 | WP_012491286.1 | cell division ATP-binding protein FtsE | - |
Sequence
Protein
Download Length: 353 a.a. Molecular weight: 37745.94 Da Isoelectric Point: 5.8234
>NTDB_id=636321 MTX54_RS04980 WP_003598111.1 995081..996142(+) (recA) [Lacticaseibacillus paracasei strain VHProbi F22]
MAGDERQKALDVALKKIEKNFGKGAIMRMGAKADTRVSVVSSGSLAVDDALGVGGFPRGRIVEIYGPESSGKTTVALHAV
AEVQKQGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGDMG
DAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIIFGSPETTPGGRALKFYATVRLEIRRSEQIKTGADVVGN
RTKIKVVKNKVAPPFRTAIVDIMYGQGISQTGELVDMAVERDIVEKAGSWYAYQGERIGQGRENAKTYLDNHADLQQTIK
QQVRVAYGMAAAPGRETASVSEDQPEIHQQAEV
MAGDERQKALDVALKKIEKNFGKGAIMRMGAKADTRVSVVSSGSLAVDDALGVGGFPRGRIVEIYGPESSGKTTVALHAV
AEVQKQGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGDMG
DAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIIFGSPETTPGGRALKFYATVRLEIRRSEQIKTGADVVGN
RTKIKVVKNKVAPPFRTAIVDIMYGQGISQTGELVDMAVERDIVEKAGSWYAYQGERIGQGRENAKTYLDNHADLQQTIK
QQVRVAYGMAAAPGRETASVSEDQPEIHQQAEV
Nucleotide
Download Length: 1062 bp
>NTDB_id=636321 MTX54_RS04980 WP_003598111.1 995081..996142(+) (recA) [Lacticaseibacillus paracasei strain VHProbi F22]
ATGGCAGGAGACGAACGCCAGAAAGCATTGGATGTTGCACTGAAAAAGATTGAAAAAAATTTTGGTAAAGGCGCGATTAT
GCGAATGGGTGCTAAGGCGGACACGCGCGTTTCCGTTGTCTCTAGCGGCTCACTTGCCGTTGATGATGCACTTGGTGTTG
GGGGCTTTCCGCGCGGACGAATTGTCGAAATTTATGGACCGGAAAGTTCCGGCAAAACAACCGTCGCGCTGCATGCTGTT
GCTGAAGTGCAGAAGCAAGGCGGTACTGCCGCCTATATTGATGCCGAGAATGCGATGGATCCCAAGTACGCAACTGCTTT
GGGCGTCAATATTGACGAATTATTGCTCTCCCAGCCAGACACAGGCGAACAAGGGCTGGAGATTGCTGATGAACTAGTCG
CGTCTGGTGCCATTGATATTGTGGTGATTGATTCAGTTGCTGCTTTGGTGCCGCGGGCTGAGATTGAGGGCGATATGGGG
GATGCCCATGTTGGCTTGCAAGCCCGATTAATGTCACAGGCGTTACGTAAGTTATCCGGTTCCATCAATAAGACAAAAAC
GATTGCTTTATTCATTAATCAGATTCGTGAGAAAGTCGGGATCATTTTTGGGAGTCCGGAAACGACACCAGGTGGTCGCG
CATTGAAGTTTTATGCGACTGTTCGGTTAGAAATCCGGCGGTCGGAACAGATCAAGACAGGCGCAGATGTCGTCGGCAAT
CGCACTAAAATCAAAGTGGTCAAGAATAAGGTGGCACCGCCTTTTCGAACAGCAATTGTGGATATCATGTATGGCCAAGG
CATTTCGCAAACTGGCGAACTTGTCGACATGGCCGTTGAGAGAGATATTGTTGAAAAAGCAGGGTCATGGTACGCGTATC
AAGGTGAACGCATCGGCCAAGGTCGCGAAAACGCTAAGACATATCTTGATAACCACGCTGATCTTCAGCAGACGATTAAA
CAACAGGTTCGCGTGGCTTATGGTATGGCAGCCGCACCTGGTCGGGAGACGGCTTCGGTCAGTGAAGATCAACCCGAAAT
ACATCAACAGGCTGAAGTATGA
ATGGCAGGAGACGAACGCCAGAAAGCATTGGATGTTGCACTGAAAAAGATTGAAAAAAATTTTGGTAAAGGCGCGATTAT
GCGAATGGGTGCTAAGGCGGACACGCGCGTTTCCGTTGTCTCTAGCGGCTCACTTGCCGTTGATGATGCACTTGGTGTTG
GGGGCTTTCCGCGCGGACGAATTGTCGAAATTTATGGACCGGAAAGTTCCGGCAAAACAACCGTCGCGCTGCATGCTGTT
GCTGAAGTGCAGAAGCAAGGCGGTACTGCCGCCTATATTGATGCCGAGAATGCGATGGATCCCAAGTACGCAACTGCTTT
GGGCGTCAATATTGACGAATTATTGCTCTCCCAGCCAGACACAGGCGAACAAGGGCTGGAGATTGCTGATGAACTAGTCG
CGTCTGGTGCCATTGATATTGTGGTGATTGATTCAGTTGCTGCTTTGGTGCCGCGGGCTGAGATTGAGGGCGATATGGGG
GATGCCCATGTTGGCTTGCAAGCCCGATTAATGTCACAGGCGTTACGTAAGTTATCCGGTTCCATCAATAAGACAAAAAC
GATTGCTTTATTCATTAATCAGATTCGTGAGAAAGTCGGGATCATTTTTGGGAGTCCGGAAACGACACCAGGTGGTCGCG
CATTGAAGTTTTATGCGACTGTTCGGTTAGAAATCCGGCGGTCGGAACAGATCAAGACAGGCGCAGATGTCGTCGGCAAT
CGCACTAAAATCAAAGTGGTCAAGAATAAGGTGGCACCGCCTTTTCGAACAGCAATTGTGGATATCATGTATGGCCAAGG
CATTTCGCAAACTGGCGAACTTGTCGACATGGCCGTTGAGAGAGATATTGTTGAAAAAGCAGGGTCATGGTACGCGTATC
AAGGTGAACGCATCGGCCAAGGTCGCGAAAACGCTAAGACATATCTTGATAACCACGCTGATCTTCAGCAGACGATTAAA
CAACAGGTTCGCGTGGCTTATGGTATGGCAGCCGCACCTGGTCGGGAGACGGCTTCGGTCAGTGAAGATCAACCCGAAAT
ACATCAACAGGCTGAAGTATGA
Similar proteins
Only experimentally validated proteins are listed.