Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | LRO88_RS09595 | Genome accession | NZ_CP089148 |
| Coordinates | 1819742..1820788 (+) | Length | 348 a.a. |
| NCBI ID | WP_003245789.1 | Uniprot ID | A0A199WHQ8 |
| Organism | Bacillus subtilis strain NIB353 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1807371..1874847 | 1819742..1820788 | within | 0 |
Gene organization within MGE regions
Location: 1807371..1874847
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LRO88_RS09540 | spoIIIE | 1807371..1809734 (+) | 2364 | WP_021479278.1 | DNA translocase SpoIIIE | - |
| LRO88_RS09545 | ymfC | 1809878..1810603 (+) | 726 | WP_003245732.1 | GntR family transcriptional regulator | - |
| LRO88_RS09550 | bcbE | 1810742..1811953 (+) | 1212 | WP_031600514.1 | bacillibactin exporter BcbE | - |
| LRO88_RS09555 | yfmF | 1812133..1813413 (+) | 1281 | WP_032725709.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| LRO88_RS09560 | yfmH | 1813410..1814696 (+) | 1287 | WP_003244823.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| LRO88_RS09565 | ymfI | 1814751..1815479 (+) | 729 | WP_015715897.1 | elongation factor P 5-aminopentanone reductase | - |
| LRO88_RS09570 | ymfJ | 1815560..1815817 (+) | 258 | WP_003245199.1 | DUF3243 domain-containing protein | - |
| LRO88_RS09575 | - | 1815947..1816738 (+) | 792 | WP_003220998.1 | DUF3388 domain-containing protein | - |
| LRO88_RS09580 | rodZ | 1816757..1817671 (+) | 915 | WP_003244699.1 | cell shape determination protein RodZ | - |
| LRO88_RS09585 | pgsA | 1817721..1818302 (+) | 582 | WP_122894526.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| LRO88_RS09590 | cinA | 1818320..1819570 (+) | 1251 | WP_122894525.1 | competence/damage-inducible protein A | Machinery gene |
| LRO88_RS09595 | recA | 1819742..1820788 (+) | 1047 | WP_003245789.1 | recombinase RecA | Machinery gene |
| LRO88_RS09600 | pbpX | 1820956..1822131 (+) | 1176 | WP_122894524.1 | serine hydrolase domain-containing protein | - |
| LRO88_RS09605 | rny | 1822407..1823969 (+) | 1563 | WP_003221010.1 | ribonuclease Y | - |
| LRO88_RS09610 | ymdB | 1824038..1824832 (+) | 795 | WP_003245138.1 | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | - |
| LRO88_RS09615 | spoVS | 1825032..1825292 (+) | 261 | WP_003154135.1 | stage V sporulation protein SpoVS | - |
| LRO88_RS09620 | tdh | 1825558..1826601 (+) | 1044 | WP_122894523.1 | L-threonine 3-dehydrogenase | - |
| LRO88_RS09625 | kbl | 1826614..1827792 (+) | 1179 | WP_122894522.1 | glycine C-acetyltransferase | - |
| LRO88_RS09630 | miaB | 1827940..1829469 (+) | 1530 | WP_231834275.1 | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | - |
| LRO88_RS09635 | ricA | 1829471..1829902 (+) | 432 | WP_003231834.1 | regulatory iron-sulfur-containing complex subunit RicA | - |
| LRO88_RS09640 | cotE | 1830163..1830708 (+) | 546 | WP_003231833.1 | outer spore coat protein CotE | - |
| LRO88_RS09645 | mutS | 1830841..1833417 (+) | 2577 | WP_003231832.1 | DNA mismatch repair protein MutS | - |
| LRO88_RS09650 | mutL | 1833433..1835316 (+) | 1884 | WP_122894521.1 | DNA mismatch repair endonuclease MutL | - |
| LRO88_RS09655 | ymzD | 1835716..1836171 (-) | 456 | WP_122894520.1 | regulatory YrvL family protein | - |
| LRO88_RS09660 | - | 1836326..1836883 (-) | 558 | WP_017694906.1 | hypothetical protein | - |
| LRO88_RS09665 | pksA | 1837004..1837618 (+) | 615 | WP_231834276.1 | TetR/AcrR family transcriptional regulator | - |
| LRO88_RS09670 | - | 1837757..1838113 (-) | 357 | WP_003231786.1 | hypothetical protein | - |
| LRO88_RS09675 | ymaE | 1838192..1839016 (-) | 825 | WP_153529745.1 | MBL fold metallo-hydrolase | - |
| LRO88_RS09680 | aprX | 1839126..1840454 (-) | 1329 | WP_046381045.1 | serine protease AprX | - |
| LRO88_RS09685 | - | 1840679..1840912 (+) | 234 | WP_014476869.1 | hypothetical protein | - |
| LRO88_RS09690 | pghC | 1841192..1841899 (+) | 708 | WP_003245758.1 | poly-gamma-glutamate hydrolase family protein | - |
| LRO88_RS09695 | ymaD | 1841969..1842421 (+) | 453 | WP_003231775.1 | OsmC family protein | - |
| LRO88_RS09700 | ebrB | 1842435..1842788 (-) | 354 | WP_014476870.1 | multidrug efflux SMR transporter subunit EbrB | - |
| LRO88_RS09705 | ebrA | 1842802..1843119 (-) | 318 | WP_015483253.1 | multidrug efflux SMR transporter subunit EbrA | - |
| LRO88_RS09710 | - | 1843254..1843529 (-) | 276 | WP_003245252.1 | hypothetical protein | - |
| LRO88_RS09715 | ymaF | 1843618..1844031 (+) | 414 | WP_003231769.1 | YmaF family protein | - |
| LRO88_RS09720 | miaA | 1844131..1845075 (+) | 945 | WP_021479248.1 | tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA | - |
| LRO88_RS09725 | hfq | 1845115..1845336 (+) | 222 | WP_003221097.1 | RNA chaperone Hfq | - |
| LRO88_RS09730 | ymzC | 1845531..1845803 (+) | 273 | WP_014479841.1 | YmzC family protein | - |
| LRO88_RS09735 | - | 1845885..1846115 (+) | 231 | WP_003245262.1 | hypothetical protein | - |
| LRO88_RS09740 | nrdI | 1846357..1846749 (+) | 393 | WP_159376809.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
| LRO88_RS09745 | nrdE | 1846709..1848811 (+) | 2103 | WP_014479842.1 | class 1b ribonucleoside-diphosphate reductase subunit alpha | - |
| LRO88_RS09750 | nrdF | 1848829..1849818 (+) | 990 | WP_072174042.1 | class 1b ribonucleoside-diphosphate reductase subunit beta | - |
| LRO88_RS09755 | - | 1849868..1850488 (+) | 621 | WP_072174041.1 | hypothetical protein | - |
| LRO88_RS09760 | cwlC | 1850552..1851319 (-) | 768 | WP_032725747.1 | sporulation-specific N-acetylmuramoyl-L-alanine amidase | - |
| LRO88_RS09765 | spoVK | 1851947..1852915 (+) | 969 | WP_159376811.1 | stage V sporulation protein K | - |
| LRO88_RS09770 | hflX | 1853048..1854310 (+) | 1263 | WP_032725748.1 | GTPase HflX | - |
| LRO88_RS09775 | efpB | 1854328..1855593 (+) | 1266 | WP_029317829.1 | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | - |
| LRO88_RS09780 | glnR | 1855703..1856110 (+) | 408 | WP_014476884.1 | transcriptional repressor GlnR | - |
| LRO88_RS09785 | glnA | 1856169..1857503 (+) | 1335 | WP_015252037.1 | type I glutamate--ammonia ligase | - |
| LRO88_RS09790 | - | 1857622..1857756 (-) | 135 | WP_231834277.1 | hypothetical protein | - |
| LRO88_RS09795 | - | 1857794..1858240 (-) | 447 | WP_231834278.1 | site-specific integrase | - |
| LRO88_RS09800 | - | 1858371..1859126 (+) | 756 | Protein_1881 | DnaB-like helicase C-terminal domain-containing protein | - |
| LRO88_RS09805 | - | 1859438..1860235 (+) | 798 | WP_038828302.1 | hypothetical protein | - |
| LRO88_RS09810 | - | 1860336..1860803 (+) | 468 | WP_038828303.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| LRO88_RS09815 | - | 1860968..1861753 (+) | 786 | WP_072174040.1 | FRG domain-containing protein | - |
| LRO88_RS09820 | - | 1862112..1862477 (+) | 366 | WP_038828305.1 | HNH endonuclease | - |
| LRO88_RS09825 | - | 1862514..1863215 (+) | 702 | WP_038828306.1 | agmatine deiminase family protein | - |
| LRO88_RS09830 | - | 1863181..1863540 (+) | 360 | WP_231834279.1 | hypothetical protein | - |
| LRO88_RS09835 | - | 1863565..1863865 (+) | 301 | Protein_1888 | T7SS effector LXG polymorphic toxin | - |
| LRO88_RS09840 | - | 1864572..1866389 (+) | 1818 | WP_231834280.1 | NTTRR-F1 domain | - |
| LRO88_RS09845 | - | 1866494..1867165 (-) | 672 | WP_124048669.1 | glycosyltransferase family protein | - |
| LRO88_RS09850 | - | 1867162..1867869 (-) | 708 | WP_032725786.1 | class I SAM-dependent methyltransferase | - |
| LRO88_RS09855 | - | 1867856..1868962 (-) | 1107 | WP_077671699.1 | glycosyltransferase | - |
| LRO88_RS09860 | - | 1868959..1870359 (-) | 1401 | WP_396129889.1 | glycosyltransferase | - |
| LRO88_RS09865 | ynaD | 1871006..1871542 (+) | 537 | WP_015483262.1 | GNAT family N-acetyltransferase | - |
| LRO88_RS09870 | - | 1871621..1872523 (+) | 903 | WP_159376813.1 | CPBP family intramembrane glutamic endopeptidase | - |
| LRO88_RS09875 | - | 1872612..1872992 (+) | 381 | WP_029726895.1 | UPF0715 family protein | - |
| LRO88_RS09880 | - | 1873331..1873495 (+) | 165 | WP_154213091.1 | hypothetical protein | - |
| LRO88_RS09885 | - | 1873571..1873801 (+) | 231 | WP_032725791.1 | helix-turn-helix domain-containing protein | - |
| LRO88_RS09890 | ynaE | 1873798..1874433 (+) | 636 | WP_032725792.1 | DUF3885 domain-containing protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 38059.21 Da Isoelectric Point: 4.7315
>NTDB_id=635299 LRO88_RS09595 WP_003245789.1 1819742..1820788(+) (recA) [Bacillus subtilis strain NIB353]
MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDNNGVVQQQAEETQEELEFEE
MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDNNGVVQQQAEETQEELEFEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=635299 LRO88_RS09595 WP_003245789.1 1819742..1820788(+) (recA) [Bacillus subtilis strain NIB353]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTCGGCAAAGGTTCCATTATGAAACT
GGGAGAAAAGACAGATACAAGAATTTCTACTGTCCCAAGCGGCTCTCTAGCTCTTGATACAGCACTGGGAATTGGCGGAT
ATCCTCGCGGACGGATTATTGAAGTATACGGTCCTGAAAGCTCAGGTAAAACAACTGTGGCGCTTCATGCGATTGCTGAA
GTTCAGCAGCAGGGCGGACAAGCCGCGTTTATCGATGCGGAGCATGCGTTAGATCCGGTATACGCGCAAAAGCTCGGTGT
TAACATAGAAGAGCTTTTACTGTCTCAGCCTGACACAGGCGAGCAGGCGCTTGAAATTGCGGAAGCATTGGTTCGAAGCG
GGGCAGTTGACATTGTCGTTGTCGACTCTGTAGCCGCTCTCGTTCCGAAAGCGGAAATTGAAGGCGACATGGGAGATTCG
CATGTCGGTTTACAAGCACGCTTAATGTCTCAAGCGCTTCGTAAGCTTTCAGGGGCCATTAACAAATCGAAGACAATCGC
GATTTTCATTAACCAAATTCGTGAAAAAGTCGGTGTTATGTTCGGGAACCCGGAAACAACTCCTGGCGGCCGTGCGTTGA
AATTCTATTCTTCCGTGCGTCTTGAAGTGCGCCGTGCTGAACAGCTGAAACAAGGCAACGACGTAATGGGGAACAAAACG
AAAATCAAAGTCGTGAAAAACAAAGTGGCTCCGCCGTTCCGTACAGCCGAGGTTGACATTATGTACGGAGAAGGCATTTC
AAAAGAAGGCGAAATCATTGATCTAGGAACTGAACTTGATATCGTGCAAAAAAGCGGTTCATGGTACTCTTATGAAGAAG
AGCGTCTTGGCCAAGGCCGTGAAAATGCAAAACAATTCCTGAAAGAAAATAAAGATATCATGCTGATGATCCAGGAGCAA
ATTCGCGAACATTACGGCTTGGATAATAACGGAGTAGTGCAGCAGCAAGCTGAAGAGACACAAGAAGAACTCGAATTTGA
AGAATAA
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTCGGCAAAGGTTCCATTATGAAACT
GGGAGAAAAGACAGATACAAGAATTTCTACTGTCCCAAGCGGCTCTCTAGCTCTTGATACAGCACTGGGAATTGGCGGAT
ATCCTCGCGGACGGATTATTGAAGTATACGGTCCTGAAAGCTCAGGTAAAACAACTGTGGCGCTTCATGCGATTGCTGAA
GTTCAGCAGCAGGGCGGACAAGCCGCGTTTATCGATGCGGAGCATGCGTTAGATCCGGTATACGCGCAAAAGCTCGGTGT
TAACATAGAAGAGCTTTTACTGTCTCAGCCTGACACAGGCGAGCAGGCGCTTGAAATTGCGGAAGCATTGGTTCGAAGCG
GGGCAGTTGACATTGTCGTTGTCGACTCTGTAGCCGCTCTCGTTCCGAAAGCGGAAATTGAAGGCGACATGGGAGATTCG
CATGTCGGTTTACAAGCACGCTTAATGTCTCAAGCGCTTCGTAAGCTTTCAGGGGCCATTAACAAATCGAAGACAATCGC
GATTTTCATTAACCAAATTCGTGAAAAAGTCGGTGTTATGTTCGGGAACCCGGAAACAACTCCTGGCGGCCGTGCGTTGA
AATTCTATTCTTCCGTGCGTCTTGAAGTGCGCCGTGCTGAACAGCTGAAACAAGGCAACGACGTAATGGGGAACAAAACG
AAAATCAAAGTCGTGAAAAACAAAGTGGCTCCGCCGTTCCGTACAGCCGAGGTTGACATTATGTACGGAGAAGGCATTTC
AAAAGAAGGCGAAATCATTGATCTAGGAACTGAACTTGATATCGTGCAAAAAAGCGGTTCATGGTACTCTTATGAAGAAG
AGCGTCTTGGCCAAGGCCGTGAAAATGCAAAACAATTCCTGAAAGAAAATAAAGATATCATGCTGATGATCCAGGAGCAA
ATTCGCGAACATTACGGCTTGGATAATAACGGAGTAGTGCAGCAGCAAGCTGAAGAGACACAAGAAGAACTCGAATTTGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.