Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LSQ66_RS18915 Genome accession   NZ_CP088952
Coordinates   4124043..4125113 (-) Length   356 a.a.
NCBI ID   WP_231766733.1    Uniprot ID   -
Organism   Massilia endophytica strain DM-R-R2A-13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4119043..4130113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSQ66_RS18890 (LSQ66_18890) sucD 4119375..4120256 (-) 882 WP_179674182.1 succinate--CoA ligase subunit alpha -
  LSQ66_RS18895 (LSQ66_18895) sucC 4120270..4121436 (-) 1167 WP_231766730.1 ADP-forming succinate--CoA ligase subunit beta -
  LSQ66_RS18900 (LSQ66_18900) - 4121508..4122080 (-) 573 WP_231766731.1 DUF2889 domain-containing protein -
  LSQ66_RS18905 (LSQ66_18905) - 4122276..4123222 (-) 947 Protein_3707 IS110 family transposase -
  LSQ66_RS18910 (LSQ66_18910) recX 4123515..4123973 (-) 459 WP_231766732.1 recombination regulator RecX -
  LSQ66_RS18915 (LSQ66_18915) recA 4124043..4125113 (-) 1071 WP_231766733.1 recombinase RecA Machinery gene
  LSQ66_RS18920 (LSQ66_18920) - 4125213..4125905 (+) 693 WP_231766734.1 response regulator transcription factor -
  LSQ66_RS18925 (LSQ66_18925) - 4125902..4127398 (+) 1497 WP_231766735.1 sensor histidine kinase -
  LSQ66_RS18930 (LSQ66_18930) - 4127391..4127642 (+) 252 WP_231766736.1 DUF4212 domain-containing protein -
  LSQ66_RS18935 (LSQ66_18935) - 4127639..4129684 (+) 2046 WP_231766737.1 sodium:solute symporter family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38056.64 Da        Isoelectric Point: 5.9012

>NTDB_id=634111 LSQ66_RS18915 WP_231766733.1 4124043..4125113(-) (recA) [Massilia endophytica strain DM-R-R2A-13]
MDDKKAVVPASEKAKALAAALAQIEKQFGKGSVMRMDASAPIEEVQTVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK
TTLTLQTIAEMQKLGGTCAFIDAEHALDVTYAQKLGVNLHELLISQPDTGEQALEICDALVRSGSVDLIVVDSVAALTPR
AEIEGDMGDALPGLQARLMSQALRKLTGTINRTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGSIK
SGDEVIGNETKVKVVKNKIAPPFKEAHFDILYGEGTSREGEIIDLGVEAKIVEKSGSWYSYNGDRIGQGKDNARTFLKER
PELAREIENKVRASLGVRELPPSAAEAPAPKLKAVE

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=634111 LSQ66_RS18915 WP_231766733.1 4124043..4125113(-) (recA) [Massilia endophytica strain DM-R-R2A-13]
ATGGACGACAAAAAAGCTGTAGTACCGGCCTCCGAAAAAGCCAAGGCACTGGCGGCGGCACTGGCCCAGATTGAGAAGCA
GTTCGGCAAGGGCTCCGTGATGCGCATGGACGCCAGCGCCCCGATCGAGGAAGTGCAGACCGTGTCCACCGGCTCCCTAG
GCCTGGATATTGCGCTGGGCGTCGGCGGCCTGCCGCGCGGCCGGGTGGTCGAAATCTACGGTCCCGAGTCCTCGGGCAAA
ACCACGCTGACCCTGCAGACCATCGCCGAGATGCAGAAGCTGGGCGGCACCTGCGCCTTCATCGACGCGGAACACGCGCT
GGACGTGACCTATGCCCAGAAGCTGGGCGTGAACCTGCACGAGCTGCTGATCTCCCAGCCGGACACCGGCGAACAGGCCC
TGGAAATCTGCGACGCGCTGGTGCGCTCCGGCTCCGTGGACCTGATCGTGGTGGACTCGGTGGCGGCCCTGACCCCGCGC
GCCGAAATCGAAGGCGACATGGGCGATGCGCTGCCAGGCCTGCAGGCCCGCCTGATGTCCCAGGCCTTGCGCAAGCTCAC
CGGCACCATCAACCGCACCAACACCCTGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCC
CGGAAACCACTACCGGCGGCAATGCGCTGAAGTTCTACGCCTCCGTGCGCCTGGACATCCGCCGCACCGGCTCCATCAAG
TCCGGCGACGAGGTGATCGGCAACGAAACCAAGGTCAAGGTCGTCAAGAACAAGATTGCGCCGCCGTTCAAGGAAGCCCA
CTTCGACATCCTGTATGGCGAAGGCACCTCGCGCGAAGGCGAAATCATCGACCTGGGCGTGGAAGCCAAGATCGTGGAGA
AGTCCGGCTCCTGGTACAGCTACAACGGCGACCGCATCGGCCAGGGCAAGGACAATGCGCGCACCTTCCTGAAAGAACGT
CCGGAACTGGCGCGCGAGATCGAGAACAAGGTCCGCGCCTCCCTGGGCGTGCGCGAGCTGCCGCCATCGGCGGCCGAAGC
TCCGGCGCCCAAGCTGAAGGCAGTGGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

85.119

94.382

0.803
  recA Neisseria gonorrhoeae MS11

73.78

92.135

0.68
  recA Neisseria gonorrhoeae MS11

73.78

92.135

0.68
  recA Neisseria gonorrhoeae strain FA1090

73.78

92.135

0.68
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.375

90.73

0.666
  recA Vibrio cholerae strain A1552

73.375

90.73

0.666
  recA Pseudomonas stutzeri DSM 10701

72.755

90.73

0.66
  recA Glaesserella parasuis strain SC1401

68.713

96.067

0.66
  recA Acinetobacter baylyi ADP1

69.461

93.82

0.652
  recA Acinetobacter baumannii D1279779

70.898

90.73

0.643
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.361

93.258

0.61
  recA Bacillus subtilis subsp. subtilis str. 168

65.443

91.854

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.031

91.573

0.596
  recA Helicobacter pylori 26695

64.438

92.416

0.596
  recA Helicobacter pylori strain NCTC11637

64.134

92.416

0.593
  recA Latilactobacillus sakei subsp. sakei 23K

63.939

92.697

0.593
  recA Streptococcus mutans UA159

61.446

93.258

0.573
  recA Streptococcus pyogenes NZ131

61.702

92.416

0.57
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.774

91.854

0.567
  recA Lactococcus lactis subsp. cremoris KW2

61.027

92.978

0.567
  recA Streptococcus pneumoniae Rx1

60.725

92.978

0.565
  recA Streptococcus pneumoniae D39

60.725

92.978

0.565
  recA Streptococcus pneumoniae TIGR4

60.725

92.978

0.565
  recA Streptococcus pneumoniae R6

60.725

92.978

0.565
  recA Streptococcus mitis SK321

60.423

92.978

0.562
  recA Streptococcus mitis NCTC 12261

60.423

92.978

0.562