Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LRK53_RS13640 Genome accession   NZ_CP088923
Coordinates   3007723..3008757 (-) Length   344 a.a.
NCBI ID   WP_027493937.1    Uniprot ID   -
Organism   Rhodanobacter thiooxydans strain FW510-R12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3002723..3013757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRK53_RS13625 (LRK53_13625) csrA 3003955..3004158 (-) 204 WP_235642320.1 carbon storage regulator CsrA -
  LRK53_RS13630 (LRK53_13630) alaS 3004428..3007055 (-) 2628 WP_027493935.1 alanine--tRNA ligase -
  LRK53_RS13635 (LRK53_13635) - 3007139..3007657 (-) 519 WP_235642321.1 regulatory protein RecX -
  LRK53_RS13640 (LRK53_13640) recA 3007723..3008757 (-) 1035 WP_027493937.1 recombinase RecA Machinery gene
  LRK53_RS13645 (LRK53_13645) - 3008895..3009404 (-) 510 WP_027493938.1 CinA family protein -
  LRK53_RS13650 (LRK53_13650) - 3010039..3011727 (-) 1689 WP_051257654.1 AMP-binding protein -
  LRK53_RS13655 (LRK53_13655) - 3011809..3012126 (-) 318 WP_027493940.1 SCP2 sterol-binding domain-containing protein -
  LRK53_RS13660 (LRK53_13660) - 3012308..3013345 (-) 1038 WP_235642322.1 CaiB/BaiF CoA-transferase family protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 36893.28 Da        Isoelectric Point: 5.8942

>NTDB_id=634023 LRK53_RS13640 WP_027493937.1 3007723..3008757(-) (recA) [Rhodanobacter thiooxydans strain FW510-R12]
MDDNKRKALTSALGQIEKQFGKGAVMRMGDRVNEPVETVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTMTLQAIA
NCQRAGGTAAFIDAEHALDPSYAEKLGVKVDDLLVSQPDTGEQALEIADMLVRSGAVDMVVVDSVAALTPKAEIEGEMGD
SHVGLHARLMSQALRKLTANIKKSGCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKKGEEIIGSE
TRVKVVKNKVAPPFRQCEFEILYGEGTSREGEIIELGVAQNLIDKSGAWYSYNGDRIGQGKENVRQFLRDNPAIANEIDK
QLRERLLVPVGKPAAAAAEALEEA

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=634023 LRK53_RS13640 WP_027493937.1 3007723..3008757(-) (recA) [Rhodanobacter thiooxydans strain FW510-R12]
ATGGATGACAACAAGCGCAAGGCGCTCACCTCCGCCCTCGGCCAGATCGAAAAGCAGTTCGGCAAAGGCGCCGTGATGCG
CATGGGTGACCGCGTCAACGAACCGGTCGAGACGGTCTCCACCGGTTCGCTGGGGCTGGACATCGCGCTCGGTGTCGGTG
GCCTGCCGCGCGGCCGCGTGGTCGAGATCTACGGGCCGGAGTCGTCCGGCAAGACCACCATGACCCTGCAGGCGATCGCC
AACTGCCAGCGTGCCGGCGGCACCGCCGCCTTCATCGACGCCGAGCACGCGCTCGACCCGAGCTACGCGGAGAAGCTGGG
CGTCAAGGTCGACGACCTGCTGGTGTCGCAGCCGGACACCGGCGAACAGGCGCTGGAAATCGCCGACATGCTGGTGCGCT
CCGGCGCGGTGGACATGGTGGTGGTCGACTCGGTCGCCGCGCTGACCCCGAAGGCGGAAATCGAGGGCGAGATGGGCGAC
TCCCACGTTGGCCTGCACGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTCACCGCCAACATCAAGAAGTCCGGCTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCCGAGACCACCACCGGCGGCAACGCGC
TGAAGTTCTACGCCTCGGTGCGGCTGGACATCCGCCGCATCGGCGCGGTGAAGAAGGGCGAGGAGATCATCGGCTCGGAA
ACCCGCGTCAAGGTGGTCAAGAACAAGGTGGCGCCGCCGTTCCGCCAGTGCGAGTTCGAGATCCTGTACGGCGAGGGCAC
CTCGCGCGAGGGCGAGATCATCGAGCTGGGCGTGGCGCAGAACCTGATCGACAAGTCCGGTGCCTGGTACAGCTACAACG
GCGACCGCATCGGCCAGGGCAAGGAGAACGTGCGCCAGTTCCTGCGCGACAACCCGGCGATCGCCAACGAGATCGACAAG
CAGCTGCGCGAGCGCCTGCTGGTGCCGGTCGGCAAGCCGGCTGCCGCCGCGGCAGAGGCACTCGAGGAAGCGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

74.203

100

0.744
  recA Acinetobacter baylyi ADP1

74.344

99.709

0.741
  recA Ralstonia pseudosolanacearum GMI1000

71.955

100

0.738
  recA Acinetobacter baumannii D1279779

72.595

99.709

0.724
  recA Neisseria gonorrhoeae MS11

74.074

94.186

0.698
  recA Neisseria gonorrhoeae MS11

74.074

94.186

0.698
  recA Neisseria gonorrhoeae strain FA1090

74.074

94.186

0.698
  recA Vibrio cholerae strain A1552

72.644

95.64

0.695
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.644

95.64

0.695
  recA Glaesserella parasuis strain SC1401

70.062

94.186

0.66
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.443

95.058

0.622
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.35

96.221

0.619
  recA Bacillus subtilis subsp. subtilis str. 168

65.217

93.605

0.61
  recA Helicobacter pylori strain NCTC11637

62.997

95.058

0.599
  recA Streptococcus mutans UA159

63.077

94.477

0.596
  recA Helicobacter pylori 26695

62.691

95.058

0.596
  recA Streptococcus pyogenes NZ131

61.585

95.349

0.587
  recA Latilactobacillus sakei subsp. sakei 23K

62.617

93.314

0.584
  recA Streptococcus mitis SK321

59.701

97.384

0.581
  recA Streptococcus pneumoniae R6

60.736

94.767

0.576
  recA Streptococcus pneumoniae TIGR4

60.736

94.767

0.576
  recA Streptococcus pneumoniae Rx1

60.736

94.767

0.576
  recA Streptococcus pneumoniae D39

60.736

94.767

0.576
  recA Streptococcus mitis NCTC 12261

61.3

93.895

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.41

95.058

0.555
  recA Lactococcus lactis subsp. cremoris KW2

59.133

93.895

0.555