Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KDJ21_RS20825 Genome accession   NZ_CP088268
Coordinates   4116980..4118020 (-) Length   346 a.a.
NCBI ID   WP_212134616.1    Uniprot ID   -
Organism   Metabacillus litoralis strain NCTR108     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4111980..4123020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDJ21_RS20805 (KDJ21_020805) - 4112383..4113306 (-) 924 WP_121661473.1 dipeptidase -
  KDJ21_RS20810 (KDJ21_020810) spoVS 4113439..4113699 (-) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  KDJ21_RS20815 (KDJ21_020815) - 4114016..4114810 (-) 795 WP_121661472.1 TIGR00282 family metallophosphoesterase -
  KDJ21_RS20820 (KDJ21_020820) rny 4114937..4116499 (-) 1563 WP_285842646.1 ribonuclease Y -
  KDJ21_RS20825 (KDJ21_020825) recA 4116980..4118020 (-) 1041 WP_212134616.1 recombinase RecA Machinery gene
  KDJ21_RS20830 (KDJ21_020830) cinA 4118321..4119571 (-) 1251 WP_269671088.1 competence/damage-inducible protein A Machinery gene
  KDJ21_RS20835 (KDJ21_020835) pgsA 4119584..4120162 (-) 579 WP_212134614.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KDJ21_RS20840 (KDJ21_020840) - 4120283..4121155 (-) 873 WP_212134612.1 helix-turn-helix domain-containing protein -
  KDJ21_RS20845 (KDJ21_020845) - 4121172..4121963 (-) 792 WP_098796361.1 DUF3388 domain-containing protein -
  KDJ21_RS20850 (KDJ21_020850) - 4122116..4122373 (-) 258 WP_121661466.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37635.82 Da        Isoelectric Point: 4.8438

>NTDB_id=633645 KDJ21_RS20825 WP_212134616.1 4116980..4118020(-) (recA) [Metabacillus litoralis strain NCTR108]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTDRKVSTVPSGSLALDTALGIGGYPRGRIIEIYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMVGNKT
KIKVVKNKVAPPFKVAEVDIMYGEGISKEGEIIDMGSDLDIVQKSGSWYSYNEERLGQGRENAKQFLKENPEIRLEIQGE
IRKHYGLDEEVTAPDESQEEMNLLGE

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=633645 KDJ21_RS20825 WP_212134616.1 4116980..4118020(-) (recA) [Metabacillus litoralis strain NCTR108]
GTGAGTGATCGTCAAGCTGCCTTAGATATGGCGTTAAAACAAATAGAGAAGCAATTCGGTAAAGGATCTATTATGAAATT
AGGAGAGCAAACAGATCGAAAGGTATCAACTGTTCCAAGTGGTTCATTAGCACTTGATACTGCTTTAGGTATAGGTGGGT
ATCCTCGTGGTAGAATCATAGAAATCTATGGTCCTGAAAGCTCTGGTAAAACAACTGTAGCACTACATGCCATCGCTGAG
GTTCAACAGCAAGGTGGTCAAGCAGCATTTATTGATGCTGAACACGCACTTGACCCTGTATATGCACAAAAACTTGGTGT
AAACATCGATGAATTACTACTTTCACAACCTGATACTGGTGAACAGGCACTAGAAATTGCAGAAGCTCTTGTACGAAGTG
GCGCCGTTGATATTTTAGTTATTGACTCGGTTGCAGCGTTAGTACCTAAAGCTGAAATTGAAGGTGAGATGGGTGATTCA
CATGTCGGTCTTCAAGCAAGACTGATGTCTCAAGCATTACGTAAATTATCAGGTGCTATAAATAAATCTAAAACAATTGC
TATTTTCATTAACCAAATTCGTGAAAAAGTAGGCGTGATGTTCGGAAACCCTGAGACAACTCCAGGTGGTCGTGCTTTAA
AATTCTATTCTTCTGTTCGTTTAGAAGTTCGCCGTGCTGAAACACTTAAACAAGGTAATGATATGGTCGGAAATAAAACT
AAAATTAAAGTAGTTAAAAATAAGGTGGCACCTCCTTTCAAAGTAGCAGAAGTTGATATTATGTACGGTGAAGGAATTTC
AAAAGAAGGCGAAATTATCGATATGGGTTCGGATTTGGATATTGTTCAAAAGAGCGGTTCTTGGTATTCGTATAATGAAG
AACGTTTAGGTCAAGGTCGAGAAAATGCCAAACAATTCCTAAAGGAAAACCCTGAAATACGTTTAGAAATACAAGGTGAA
ATCCGTAAACATTATGGTCTAGACGAAGAAGTTACTGCACCAGATGAAAGTCAAGAAGAGATGAATTTATTAGGGGAATA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

92.378

94.798

0.876
  recA Latilactobacillus sakei subsp. sakei 23K

74.419

99.422

0.74
  recA Streptococcus mitis SK321

66.854

100

0.688
  recA Streptococcus pneumoniae D39

69.706

98.266

0.685
  recA Streptococcus pneumoniae TIGR4

69.706

98.266

0.685
  recA Streptococcus pneumoniae R6

69.706

98.266

0.685
  recA Streptococcus pneumoniae Rx1

69.706

98.266

0.685
  recA Streptococcus mutans UA159

70.181

95.954

0.673
  recA Streptococcus mitis NCTC 12261

70.606

95.376

0.673
  recA Streptococcus pyogenes NZ131

69.817

94.798

0.662
  recA Lactococcus lactis subsp. cremoris KW2

67.56

97.11

0.656
  recA Neisseria gonorrhoeae strain FA1090

64.653

95.665

0.619
  recA Neisseria gonorrhoeae MS11

64.653

95.665

0.619
  recA Neisseria gonorrhoeae MS11

64.653

95.665

0.619
  recA Helicobacter pylori 26695

62.757

98.555

0.619
  recA Helicobacter pylori strain NCTC11637

62.757

98.555

0.619
  recA Ralstonia pseudosolanacearum GMI1000

65.244

94.798

0.618
  recA Acinetobacter baumannii D1279779

61.383

100

0.616
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.242

97.977

0.61
  recA Vibrio cholerae strain A1552

65.421

92.775

0.607
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.421

92.775

0.607
  recA Acinetobacter baylyi ADP1

60.756

99.422

0.604
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.804

94.22

0.601
  recA Glaesserella parasuis strain SC1401

63.636

92.197

0.587
  recA Pseudomonas stutzeri DSM 10701

63.125

92.486

0.584
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.187

92.486

0.575