Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LK774_RS17475 Genome accession   NZ_CP088229
Coordinates   3648978..3650036 (-) Length   352 a.a.
NCBI ID   WP_014884978.1    Uniprot ID   -
Organism   Enterobacter kobei strain Ek72     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 3650826..3651284 3648978..3650036 flank 790


Gene organization within MGE regions


Location: 3648978..3651284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK774_RS17475 (LK774_17505) recA 3648978..3650036 (-) 1059 WP_014884978.1 recombinase RecA Machinery gene
  LK774_RS17480 (LK774_17510) pncC 3650126..3650623 (-) 498 WP_023331148.1 nicotinamide-nucleotide amidase -
  LK774_RS17485 (LK774_17515) tnpA 3650826..3651284 (-) 459 WP_023331149.1 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37853.31 Da        Isoelectric Point: 4.8134

>NTDB_id=633369 LK774_RS17475 WP_014884978.1 3648978..3650036(-) (recA) [Enterobacter kobei strain Ek72]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRTMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFFGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANAISWLKENPAAAKEI
EKKVRELLLSNQDSKPDFVVDAADAEETNEDF

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=633369 LK774_RS17475 WP_014884978.1 3648978..3650036(-) (recA) [Enterobacter kobei strain Ek72]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTACCATGGATGTTGAAACGATCTCCACCGGTTCGCTTTCTCTGGACATCGCGCTGGGCG
CGGGCGGTCTGCCAATGGGCCGTATCGTAGAGATCTACGGGCCAGAGTCCTCCGGTAAAACCACCCTGACGCTGCAGGTG
ATTGCTGCGGCACAGCGCGAAGGTAAAACCTGTGCGTTTATCGATGCCGAGCACGCGCTGGATCCTGTTTATGCGCGTAA
ACTGGGCGTGGACATCGACAACCTGCTGTGTTCTCAGCCGGACACCGGTGAGCAGGCGCTGGAAATTTGTGACGCGCTGG
CGCGCTCTGGTGCTGTTGACGTTATCGTGGTCGACTCCGTTGCTGCACTGACGCCAAAAGCGGAAATCGAAGGTGAAATC
GGCGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCAGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACAACCGGTGGTA
ACGCACTGAAATTCTACGCCTCTGTCCGTCTGGATATCCGCCGTATCGGCGCGGTGAAAGAGGGTGAAAACGTCGTTGGT
AGCGAAACGCGCGTGAAGGTTGTGAAGAACAAAATCGCCGCACCGTTCAAACAGGCTGAATTCCAGATCCTCTACGGCGA
AGGGATTAACTTCTTCGGTGAGCTGGTTGACCTGGGCGTGAAAGAGAAGCTGATTGAAAAAGCGGGCGCCTGGTATAGCT
ATAACGGTGACAAAATTGGTCAGGGTAAAGCGAATGCGATTTCCTGGCTGAAAGAGAACCCGGCTGCGGCGAAAGAGATT
GAGAAGAAGGTGCGTGAGCTTCTGCTGAGCAACCAGGACTCTAAACCTGATTTCGTGGTGGATGCTGCGGATGCTGAAGA
AACCAACGAAGACTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

84.894

94.034

0.798
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.894

94.034

0.798
  recA Pseudomonas stutzeri DSM 10701

72.832

98.295

0.716
  recA Acinetobacter baumannii D1279779

70.774

99.148

0.702
  recA Acinetobacter baylyi ADP1

74.39

93.182

0.693
  recA Glaesserella parasuis strain SC1401

69.364

98.295

0.682
  recA Neisseria gonorrhoeae MS11

69.632

92.614

0.645
  recA Neisseria gonorrhoeae MS11

69.632

92.614

0.645
  recA Neisseria gonorrhoeae strain FA1090

69.632

92.614

0.645
  recA Ralstonia pseudosolanacearum GMI1000

70.74

88.352

0.625
  recA Helicobacter pylori strain NCTC11637

62.018

95.739

0.594
  recA Helicobacter pylori 26695

61.721

95.739

0.591
  recA Streptococcus pneumoniae TIGR4

62.848

91.761

0.577
  recA Streptococcus pneumoniae Rx1

62.848

91.761

0.577
  recA Streptococcus pneumoniae D39

62.848

91.761

0.577
  recA Streptococcus pneumoniae R6

62.848

91.761

0.577
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

91.193

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.037

92.045

0.571
  recA Streptococcus mitis NCTC 12261

62.229

91.761

0.571
  recA Streptococcus mitis SK321

62.229

91.761

0.571
  recA Streptococcus pyogenes NZ131

61.846

92.33

0.571
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.36

94.602

0.571
  recA Lactococcus lactis subsp. cremoris KW2

61.92

91.761

0.568
  recA Streptococcus mutans UA159

61.538

92.33

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

60.923

92.33

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

91.193

0.557