Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LPC11_RS07555 Genome accession   NZ_CP088218
Coordinates   1572431..1573477 (-) Length   348 a.a.
NCBI ID   WP_231307204.1    Uniprot ID   -
Organism   Staphylococcus sp. HL28     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1567431..1578477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPC11_RS07540 (LPC11_07540) - 1569137..1569928 (-) 792 WP_231307203.1 TIGR00282 family metallophosphoesterase -
  LPC11_RS07545 (LPC11_07545) - 1570091..1570306 (+) 216 WP_002467042.1 hypothetical protein -
  LPC11_RS07550 (LPC11_07550) rny 1570429..1571988 (-) 1560 WP_023375206.1 ribonuclease Y -
  LPC11_RS07555 (LPC11_07555) recA 1572431..1573477 (-) 1047 WP_231307204.1 recombinase RecA Machinery gene
  LPC11_RS07560 (LPC11_07560) - 1573644..1574795 (-) 1152 WP_023375204.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  LPC11_RS07565 (LPC11_07565) pgsA 1574967..1575542 (-) 576 WP_015365063.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LPC11_RS07570 (LPC11_07570) - 1575573..1575965 (-) 393 WP_041613973.1 helix-turn-helix domain-containing protein -
  LPC11_RS07575 (LPC11_07575) - 1575985..1576821 (-) 837 WP_041613971.1 YmfK family protein -
  LPC11_RS07580 (LPC11_07580) - 1576957..1577661 (-) 705 WP_023375201.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37827.80 Da        Isoelectric Point: 5.2246

>NTDB_id=633325 LPC11_RS07555 WP_231307204.1 1572431..1573477(-) (recA) [Staphylococcus sp. HL28]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSTSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
ETQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQKIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENEIVDKSGAWYSYNGERMGQGKENVKTYLKENPQIKDEIDQ
KLREKLGIFDGDVEEKEEDAPKSLFDEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=633325 LPC11_RS07555 WP_231307204.1 1572431..1573477(-) (recA) [Staphylococcus sp. HL28]
TTGGATAACGAACGTCAAAAAGCTCTCGATACAGTAATAAAAAATATGGAAAAATCATTTGGTAAAGGTGCAGTAATGAA
ATTAGGCGATAATAAAGGTCGCAGAGTTTCAAGTACATCAAGTGGTTCAGTTACATTAGATAACGCATTAGGTGTAGGTG
GCTATCCTAAAGGAAGAATTATTGAAATATATGGACCAGAAAGTTCTGGTAAAACTACAGTTGCATTACATGCTATTGCA
GAAACACAAAAAAACGGCGGCGTTGCTGCATTTATTGATGCTGAGCATGCATTAGATCCTGTTTATGCTCAAGCACTAGG
CGTAGATATTGATAATCTATATTTATCACAACCTGACCATGGGGAACAAGGTTTAGAGATTGCTGAAGCTTTTGTTCGTA
GTGGTGCAGTTGATATTGTAGTAGTCGATTCAGTAGCTGCATTAACACCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACTCATGTAGGTTTACAAGCAAGATTAATGTCACAAGCATTACGTAAACTATCTGGAGCTATTTCTAAATCAAATACGAC
TGCCATCTTCATTAACCAAATTCGTGAAAAAGTAGGTGTAATGTTCGGTAATCCTGAAACAACACCAGGTGGTAGAGCAT
TAAAATTCTATAGTTCTGTTCGTTTAGAAGTTCGTCGTGCCGAACAATTGAAACAAGGACAAAAGATTGTTGGTAATAGA
ACTAAGATTAAAGTAGTTAAAAACAAAGTTGCACCACCATTCAGAGTTGCAGAAGTTGATATCATGTATGGTCAAGGTAT
CTCTAAAGAAGGCGAACTGATTGATCTTGGTGTGGAAAATGAAATCGTTGATAAATCTGGAGCTTGGTATTCATATAATG
GTGAAAGAATGGGACAAGGTAAAGAAAATGTTAAAACTTACCTTAAAGAAAATCCTCAAATTAAAGATGAAATCGACCAA
AAACTACGTGAGAAGCTCGGTATTTTTGATGGTGATGTAGAAGAAAAAGAAGAAGACGCACCGAAGTCATTATTTGATGA
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.687

93.678

0.718
  recA Latilactobacillus sakei subsp. sakei 23K

69.795

97.989

0.684
  recA Streptococcus pneumoniae Rx1

65.903

100

0.661
  recA Streptococcus pneumoniae TIGR4

65.903

100

0.661
  recA Streptococcus pneumoniae R6

65.903

100

0.661
  recA Streptococcus pneumoniae D39

65.903

100

0.661
  recA Streptococcus pyogenes NZ131

68.997

94.54

0.652
  recA Streptococcus mutans UA159

64.857

100

0.652
  recA Streptococcus mitis NCTC 12261

65.507

99.138

0.649
  recA Streptococcus mitis SK321

66.366

95.69

0.635
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.706

97.701

0.632
  recA Acinetobacter baumannii D1279779

62.931

100

0.629
  recA Lactococcus lactis subsp. cremoris KW2

66.163

95.115

0.629
  recA Neisseria gonorrhoeae MS11

65.957

94.54

0.624
  recA Neisseria gonorrhoeae MS11

65.957

94.54

0.624
  recA Neisseria gonorrhoeae strain FA1090

65.957

94.54

0.624
  recA Acinetobacter baylyi ADP1

66.258

93.678

0.621
  recA Helicobacter pylori 26695

65.244

94.253

0.615
  recA Helicobacter pylori strain NCTC11637

64.939

94.253

0.612
  recA Vibrio cholerae strain A1552

65.031

93.678

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.031

93.678

0.609
  recA Ralstonia pseudosolanacearum GMI1000

64.634

94.253

0.609
  recA Pseudomonas stutzeri DSM 10701

62.577

93.678

0.586
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.542

95.402

0.578
  recA Glaesserella parasuis strain SC1401

61.42

93.103

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.625

91.954

0.557