Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   SAGCMC97051_RS11440 Genome accession   NZ_AP020310
Coordinates   2230507..2231616 (+) Length   369 a.a.
NCBI ID   WP_000264863.1    Uniprot ID   Q8DWQ8
Organism   Streptococcus agalactiae strain GCMC97051     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2225507..2236616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAGCMC97051_RS11415 (SAGCMC97051_21890) - 2225879..2226718 (-) 840 WP_000181757.1 energy-coupling factor ABC transporter ATP-binding protein -
  SAGCMC97051_RS11420 (SAGCMC97051_21900) pgsA 2226718..2227260 (-) 543 WP_000976003.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  SAGCMC97051_RS11425 (SAGCMC97051_21910) yfmH 2227383..2228666 (-) 1284 WP_000217754.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  SAGCMC97051_RS11430 (SAGCMC97051_21920) yfmF 2228668..2229912 (-) 1245 WP_000706188.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  SAGCMC97051_RS11435 (SAGCMC97051_21930) yaaA 2230151..2230504 (+) 354 WP_000384871.1 S4 domain-containing protein YaaA -
  SAGCMC97051_RS11440 (SAGCMC97051_21940) recF 2230507..2231616 (+) 1110 WP_000264863.1 DNA replication/repair protein RecF Machinery gene
  SAGCMC97051_RS11445 (SAGCMC97051_21950) - 2231628..2232494 (-) 867 WP_000398683.1 GRP family sugar transporter -
  SAGCMC97051_RS11450 (SAGCMC97051_21960) - 2232550..2233212 (-) 663 WP_001865840.1 helix-turn-helix domain-containing protein -
  SAGCMC97051_RS11455 (SAGCMC97051_21970) guaB 2233287..2234768 (-) 1482 WP_000073440.1 IMP dehydrogenase -
  SAGCMC97051_RS11460 (SAGCMC97051_21980) - 2234925..2235410 (-) 486 WP_001034427.1 arginine repressor -
  SAGCMC97051_RS11465 (SAGCMC97051_21990) - 2235420..2236100 (-) 681 WP_000628851.1 Crp/Fnr family transcriptional regulator -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 42526.35 Da        Isoelectric Point: 7.3132

>NTDB_id=63268 SAGCMC97051_RS11440 WP_000264863.1 2230507..2231616(+) (recF) [Streptococcus agalactiae strain GCMC97051]
MWIKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKELVHFKHHDVQITGEVIRKSGH
LNLDIQLSEKGRITKVNHLKQAKLSDYIGAMTVVLFAPEDLQLVKGAPSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQR
NTYLKTTNNVDKTFLTVLDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEFTDKSSIREHFLN
QLSKSHSRDIFKKNTSIGPHRDDITFFINDINATFASQGQQRSLILSLKLAEIELIKTVTNDYPILLLDDVMSELDNHRQ
LKLLEGIKENVQTFITTTSLEHLSALPDQLKIFNVSDGTISINEKKATD

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=63268 SAGCMC97051_RS11440 WP_000264863.1 2230507..2231616(+) (recF) [Streptococcus agalactiae strain GCMC97051]
ATGTGGATAAAAAATATTTCTTTAAAACATTATCGTAATTATGAAGAAGCACAAGTAGATTTTTCACCCAACCTCAATAT
TTTCATTGGCCGCAATGCTCAAGGAAAGACAAATTTTTTAGAAGCAATCTACTTCTTGGCTTTGACTCGAAGTCACCGTA
CCCGTTCTGATAAAGAACTTGTACATTTTAAACACCATGATGTACAAATTACAGGTGAGGTAATCCGCAAAAGTGGCCAT
CTTAACTTAGATATTCAATTATCTGAAAAAGGAAGAATCACTAAAGTTAACCATCTTAAACAGGCAAAATTATCTGATTA
TATTGGGGCTATGACTGTCGTACTTTTTGCCCCTGAAGATCTTCAATTAGTTAAAGGTGCACCTAGTCTAAGACGAAAAT
TTTTAGATATAGATATTGGACAAATTAAGCCAACGTACTTAGCTGAACTTTCAAATTACAATCATGTATTAAAACAAAGA
AACACTTATCTAAAAACTACTAATAACGTCGACAAAACTTTTTTAACAGTCCTTGATGAACAATTAGCTGATTATGGAAG
TCGTGTCATTGAACACCGTTTTGATTTTATCCAAGCCCTAAATGATGAAGCGGACAAACATCACTACATTATCAGTACTG
AGTTAGAACATTTATCTATTCACTACAAATCGTCAATAGAGTTTACAGATAAGTCAAGTATTAGGGAACATTTTTTAAAC
CAATTATCTAAAAGCCACTCAAGAGACATCTTTAAGAAAAACACAAGCATCGGACCTCATCGTGATGATATTACTTTCTT
TATTAATGATATCAATGCTACTTTTGCTAGCCAAGGGCAACAAAGAAGCCTTATTTTATCATTGAAATTAGCAGAAATTG
AGCTAATAAAAACCGTTACCAACGATTATCCGATTCTCTTACTTGACGACGTCATGAGTGAACTTGACAACCATCGTCAA
CTAAAACTCTTAGAGGGAATCAAAGAGAATGTTCAAACATTTATTACTACAACAAGTTTAGAACATTTAAGTGCTTTACC
TGATCAACTCAAAATCTTTAACGTTAGTGATGGTACTATTAGTATTAATGAAAAAAAAGCAACAGATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-359)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DWQ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

63.085

98.374

0.621
  recF Bacillus subtilis subsp. subtilis str. 168

44.565

99.729

0.444

Multiple sequence alignment