Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LPA45_RS02630 Genome accession   NZ_CP088083
Coordinates   560153..561208 (+) Length   351 a.a.
NCBI ID   WP_116317178.1    Uniprot ID   -
Organism   Cupriavidus sp. Agwp_2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 555153..566208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPA45_RS02610 (LPA45_02605) - 555305..557002 (-) 1698 WP_116317174.1 MFS transporter -
  LPA45_RS02615 (LPA45_02610) - 557254..557595 (-) 342 WP_116317175.1 DUF4212 domain-containing protein -
  LPA45_RS02620 (LPA45_02615) - 557592..559157 (-) 1566 WP_116317176.1 sensor histidine kinase -
  LPA45_RS02625 (LPA45_02620) - 559224..559913 (-) 690 WP_116317177.1 response regulator transcription factor -
  LPA45_RS02630 (LPA45_02625) recA 560153..561208 (+) 1056 WP_116317178.1 recombinase RecA Machinery gene
  LPA45_RS02635 (LPA45_02630) recX 561314..561781 (+) 468 WP_116317179.1 recombination regulator RecX -
  LPA45_RS02640 (LPA45_02635) - 561987..562694 (+) 708 WP_116317180.1 DUF2889 domain-containing protein -
  LPA45_RS02645 (LPA45_02640) sucC 562785..563951 (+) 1167 WP_116317181.1 ADP-forming succinate--CoA ligase subunit beta -
  LPA45_RS02650 (LPA45_02645) sucD 564051..564932 (+) 882 WP_062796940.1 succinate--CoA ligase subunit alpha -
  LPA45_RS02655 (LPA45_02650) - 565188..565883 (+) 696 WP_116317182.1 TerC family protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37358.83 Da        Isoelectric Point: 5.0467

>NTDB_id=632616 LPA45_RS02630 WP_116317178.1 560153..561208(+) (recA) [Cupriavidus sp. Agwp_2]
MDDKKAGAGVSAEKQKALAAALSQIEKQFGKGSIMRLGDGEVEKDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSG
KTTLTLQVVAEMQKLGGTCAFIDAEHALDVSYANKLGVNVGDLLISQPDTGEQALEITDALVRSGSIDLIVIDSVAALVP
KAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSI
KKGDDVIGNETKVKVVKNKVSPPFREAFFDILYGQGISRQGEIIDLGVDAKIVEKSGAWYSYNGDKIGQGKDNAREYLRE
NPDIAEEIENKVRVALGVVPTNPVAAEALEG

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=632616 LPA45_RS02630 WP_116317178.1 560153..561208(+) (recA) [Cupriavidus sp. Agwp_2]
ATGGACGACAAGAAGGCAGGTGCGGGCGTGAGCGCCGAGAAGCAGAAGGCGCTTGCCGCCGCGCTCTCCCAGATCGAGAA
GCAGTTCGGCAAGGGCTCGATCATGCGCCTGGGCGACGGCGAGGTCGAAAAGGACATCCAGGTGGTCTCCACCGGTTCGC
TCGGCCTGGACATCGCGCTTGGCGTCGGCGGCCTCCCGCGCGGCCGCGTGGTCGAGATCTATGGTCCGGAATCGTCGGGC
AAGACCACGCTGACGCTGCAGGTCGTGGCCGAGATGCAGAAGCTGGGCGGCACCTGCGCCTTTATCGACGCCGAGCACGC
GCTGGACGTCAGCTACGCCAACAAGCTGGGCGTGAACGTCGGCGACCTGCTGATCTCCCAGCCGGACACCGGCGAGCAGG
CGCTGGAAATCACCGACGCGCTGGTGCGCTCGGGCTCGATCGACCTGATCGTGATCGACTCGGTGGCGGCGCTGGTGCCC
AAGGCTGAAATCGAAGGCGAAATGGGCGACTCGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGTAAGCT
GACCGGCACCATCAAGCGTACCAACTGCCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGTGTGATGTTCGGCT
CGCCGGAAACCACCACCGGCGGCAACGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGATATCCGCCGCATCGGCTCGATC
AAGAAGGGCGACGACGTCATCGGCAACGAGACCAAGGTCAAGGTGGTCAAGAACAAGGTCTCGCCGCCGTTCCGCGAAGC
CTTCTTCGACATCCTCTACGGCCAGGGTATCTCCCGCCAGGGCGAGATCATCGACCTCGGCGTGGACGCCAAGATCGTCG
AGAAGTCGGGCGCGTGGTACAGCTACAACGGCGACAAGATCGGCCAGGGCAAGGACAACGCGCGCGAATACCTGCGCGAG
AACCCGGACATCGCCGAAGAGATCGAGAACAAGGTGCGAGTGGCGCTGGGTGTGGTACCGACCAACCCGGTGGCTGCGGA
AGCGCTGGAAGGCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

86.04

100

0.86
  recA Pseudomonas stutzeri DSM 10701

73.591

96.011

0.707
  recA Neisseria gonorrhoeae MS11

73.86

93.732

0.692
  recA Neisseria gonorrhoeae MS11

73.86

93.732

0.692
  recA Neisseria gonorrhoeae strain FA1090

73.86

93.732

0.692
  recA Acinetobacter baylyi ADP1

72.754

95.157

0.692
  recA Acinetobacter baumannii D1279779

72.948

93.732

0.684
  recA Vibrio cholerae strain A1552

72.948

93.732

0.684
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.948

93.732

0.684
  recA Glaesserella parasuis strain SC1401

70.536

95.726

0.675
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.653

93.732

0.615
  recA Helicobacter pylori 26695

65.35

93.732

0.613
  recA Helicobacter pylori strain NCTC11637

65.046

93.732

0.61
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.337

92.877

0.607
  recA Bacillus subtilis subsp. subtilis str. 168

64.526

93.162

0.601
  recA Latilactobacillus sakei subsp. sakei 23K

64.417

92.877

0.598
  recA Lactococcus lactis subsp. cremoris KW2

61.243

96.296

0.59
  recA Streptococcus mitis NCTC 12261

60.947

96.296

0.587
  recA Streptococcus pneumoniae TIGR4

59.767

97.721

0.584
  recA Streptococcus pneumoniae Rx1

59.767

97.721

0.584
  recA Streptococcus pneumoniae D39

59.767

97.721

0.584
  recA Streptococcus pneumoniae R6

59.767

97.721

0.584
  recA Streptococcus mitis SK321

61.446

94.587

0.581
  recA Streptococcus mutans UA159

61.631

94.302

0.581
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.154

92.593

0.576
  recA Streptococcus pyogenes NZ131

61.094

93.732

0.573