Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LRM40_RS16845 Genome accession   NZ_CP088081
Coordinates   3616466..3617521 (+) Length   351 a.a.
NCBI ID   WP_151124593.1    Uniprot ID   -
Organism   Ideonella dechloratans strain CCUG 30977     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3611466..3622521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRM40_RS16825 (LRM40_16825) - 3611974..3612645 (-) 672 WP_151124589.1 hypothetical protein -
  LRM40_RS16830 (LRM40_16830) - 3613147..3613932 (-) 786 WP_151124590.1 hypothetical protein -
  LRM40_RS16835 (LRM40_16835) - 3614102..3615592 (-) 1491 WP_151124591.1 sensor histidine kinase -
  LRM40_RS16840 (LRM40_16840) - 3615655..3616326 (-) 672 WP_151124592.1 response regulator transcription factor -
  LRM40_RS16845 (LRM40_16845) recA 3616466..3617521 (+) 1056 WP_151124593.1 recombinase RecA Machinery gene
  LRM40_RS16850 (LRM40_16850) - 3617588..3618199 (+) 612 WP_151124594.1 regulatory protein RecX -
  LRM40_RS16855 (LRM40_16855) sucC 3618494..3619654 (+) 1161 WP_151124595.1 ADP-forming succinate--CoA ligase subunit beta -
  LRM40_RS16860 (LRM40_16860) sucD 3619678..3620571 (+) 894 WP_151124596.1 succinate--CoA ligase subunit alpha -
  LRM40_RS16865 (LRM40_16865) - 3620668..3621408 (+) 741 WP_151124597.1 TerC family protein -
  LRM40_RS16870 (LRM40_16870) - 3621640..3622329 (+) 690 WP_151124598.1 TerC family protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37667.09 Da        Isoelectric Point: 4.9610

>NTDB_id=632607 LRM40_RS16845 WP_151124593.1 3616466..3617521(+) (recA) [Ideonella dechloratans strain CCUG 30977]
MNAPVTNLNPDKAKALQAALSQIEKQFGKGSIMRLGVDEQPEDIQVVSTGSLGLDVALGVGGLPRGRVIEIYGPESSGKT
TLTLQVVAEMQKLGGVAAFIDAEHALDVQYAQKLGVNLQDLLISQPDTGEQALEIVDSLVRSGAVDLVVIDSVAALTPKA
EIEGEMGDQLPGLQARLMSQALRKLTATIKKSNCTVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKR
GEEVVGNETRVKVVKNKVSPPFREAEFDILYGEGVSREGEIIDLGVQAKVVDKSGAWYAYNGEKIGQGKDNCREFLRENP
ELAREIENKVREALGVRQLNPVAGGAAEAGE

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=632607 LRM40_RS16845 WP_151124593.1 3616466..3617521(+) (recA) [Ideonella dechloratans strain CCUG 30977]
ATGAACGCCCCTGTCACCAACCTGAACCCCGACAAGGCCAAGGCCCTGCAGGCTGCGCTGTCGCAGATCGAAAAGCAGTT
CGGCAAGGGCTCCATCATGCGCCTGGGGGTGGATGAGCAACCCGAGGACATCCAGGTGGTGTCCACCGGTTCGCTGGGCC
TGGATGTGGCCCTGGGCGTCGGCGGCCTGCCCCGCGGCCGCGTGATCGAGATCTACGGCCCGGAATCCTCCGGCAAGACC
ACCCTGACCCTGCAGGTCGTGGCCGAGATGCAGAAGCTCGGCGGCGTGGCCGCCTTCATCGACGCCGAACATGCCCTGGA
CGTGCAGTACGCCCAGAAGCTGGGCGTCAACCTGCAGGACCTGCTGATCAGCCAGCCCGACACCGGCGAGCAGGCACTGG
AGATCGTCGATTCCCTGGTGCGCTCCGGCGCGGTGGATCTGGTCGTCATCGACTCGGTGGCCGCGCTGACACCCAAGGCC
GAAATCGAAGGCGAGATGGGCGACCAGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCCCTGCGCAAGCTCACCGC
CACCATCAAGAAGTCCAACTGCACGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGG
AGACCACCACCGGCGGCAACGCGCTGAAGTTCTACGCCTCGGTGCGTTTGGACATCCGCCGCATCGGCTCGATCAAGCGT
GGCGAGGAAGTCGTCGGCAACGAGACCCGCGTCAAGGTCGTCAAGAACAAGGTCAGCCCGCCTTTCCGCGAGGCCGAGTT
CGACATCCTCTACGGCGAGGGCGTCAGCCGCGAGGGCGAGATCATCGACCTGGGCGTGCAGGCCAAGGTGGTGGACAAAT
CCGGTGCCTGGTACGCCTACAACGGCGAGAAGATCGGCCAGGGCAAGGACAACTGCCGCGAATTCCTGCGCGAGAACCCC
GAGCTGGCCCGCGAGATCGAGAACAAGGTGCGCGAGGCCCTGGGCGTGCGCCAGCTGAACCCGGTGGCCGGCGGCGCGGC
CGAAGCCGGCGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

86.25

91.168

0.786
  recA Pseudomonas stutzeri DSM 10701

70.674

97.151

0.687
  recA Neisseria gonorrhoeae MS11

72.644

93.732

0.681
  recA Neisseria gonorrhoeae strain FA1090

72.644

93.732

0.681
  recA Neisseria gonorrhoeae MS11

72.644

93.732

0.681
  recA Vibrio cholerae strain A1552

70.359

95.157

0.67
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.359

95.157

0.67
  recA Acinetobacter baylyi ADP1

71.254

93.162

0.664
  recA Acinetobacter baumannii D1279779

70.948

93.162

0.661
  recA Glaesserella parasuis strain SC1401

68.862

95.157

0.655
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.638

98.291

0.635
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.373

95.442

0.624
  recA Helicobacter pylori 26695

66.565

93.732

0.624
  recA Helicobacter pylori strain NCTC11637

66.261

93.732

0.621
  recA Bacillus subtilis subsp. subtilis str. 168

65.337

92.877

0.607
  recA Latilactobacillus sakei subsp. sakei 23K

61.585

93.447

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.231

92.593

0.567
  recA Streptococcus pneumoniae Rx1

60.303

94.017

0.567
  recA Streptococcus pneumoniae D39

60.303

94.017

0.567
  recA Streptococcus pneumoniae R6

60.303

94.017

0.567
  recA Streptococcus pneumoniae TIGR4

60.303

94.017

0.567
  recA Lactococcus lactis subsp. cremoris KW2

59.05

96.011

0.567
  recA Streptococcus mutans UA159

60

94.017

0.564
  recA Streptococcus mitis NCTC 12261

60

94.017

0.564
  recA Streptococcus mitis SK321

59.459

94.872

0.564
  recA Streptococcus pyogenes NZ131

59.574

93.732

0.558