Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LQZ07_RS17520 Genome accession   NZ_CP088080
Coordinates   3831854..3832897 (-) Length   347 a.a.
NCBI ID   WP_152781624.1    Uniprot ID   A0A7C9JYN3
Organism   Agarivorans sp. B2Z047     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3826854..3837897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQZ07_RS17500 (LQZ07_17500) csrA 3827063..3827242 (-) 180 WP_016402827.1 carbon storage regulator CsrA -
  LQZ07_RS17505 (LQZ07_17505) - 3827350..3828564 (-) 1215 WP_249483219.1 aspartate kinase -
  LQZ07_RS17510 (LQZ07_17510) alaS 3828603..3831227 (-) 2625 WP_152781620.1 alanine--tRNA ligase -
  LQZ07_RS17515 (LQZ07_17515) - 3831370..3831819 (-) 450 WP_152781622.1 regulatory protein RecX -
  LQZ07_RS17520 (LQZ07_17520) recA 3831854..3832897 (-) 1044 WP_152781624.1 recombinase RecA Machinery gene
  LQZ07_RS17525 (LQZ07_17525) mutS 3833068..3835632 (+) 2565 WP_152781626.1 DNA mismatch repair protein MutS -
  LQZ07_RS17530 (LQZ07_17530) rpoS 3835702..3836652 (-) 951 WP_016402833.1 RNA polymerase sigma factor RpoS -
  LQZ07_RS17535 (LQZ07_17535) - 3836708..3837511 (-) 804 WP_152781628.1 peptidoglycan DD-metalloendopeptidase family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37460.05 Da        Isoelectric Point: 5.1659

>NTDB_id=632582 LQZ07_RS17520 WP_152781624.1 3831854..3832897(-) (recA) [Agarivorans sp. B2Z047]
MDQNKQKALAAALGQIEKQFGKGSIMKLGDNRTMDIETISTGSLSIDIALGAGGLPMGRVIEIYGPESSGKTTLTLEAIA
QAQKVGKVCAFVDAEHALDPIYAKKLGVDVDNLLVSQPDTGEQALEITDMLARSGAVDMIVIDSVAALTPKAEIEGDMGD
SHVGLQARLMSQALRKLTGTLKQTNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKAGDEVVGNE
TRVKVVKNKIAPPFKQAEFQIMYGEGFNRYGELVDLGVKEKLVDKAGAWFSYKGNKIGQGKANASTYLKEHPEVAQEIEM
TIRNNLLNKIELEEQEPAAEAPVDQEA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=632582 LQZ07_RS17520 WP_152781624.1 3831854..3832897(-) (recA) [Agarivorans sp. B2Z047]
ATGGATCAGAACAAACAAAAGGCATTAGCTGCGGCCCTAGGCCAAATTGAGAAGCAATTTGGTAAAGGCTCAATCATGAA
GCTTGGTGATAACCGTACCATGGATATTGAAACCATTTCTACTGGTTCTTTATCAATTGATATTGCTTTGGGTGCGGGTG
GCTTGCCAATGGGCCGTGTGATTGAAATCTATGGTCCTGAAAGTTCTGGTAAAACCACACTTACTTTAGAAGCTATCGCG
CAAGCCCAAAAAGTGGGTAAAGTATGTGCCTTTGTTGACGCGGAGCATGCTTTAGACCCTATCTATGCAAAAAAGCTAGG
TGTAGACGTAGACAACCTATTGGTATCTCAACCAGATACTGGTGAGCAAGCTCTAGAAATTACCGATATGTTAGCCCGCT
CAGGCGCTGTAGATATGATTGTTATTGACTCGGTGGCAGCCTTAACACCAAAAGCAGAAATTGAAGGCGACATGGGCGAT
AGCCACGTTGGTCTGCAAGCGCGTTTGATGTCTCAAGCATTACGTAAGCTAACCGGTACCCTTAAGCAAACTAACTGTAT
GTGTATCTTCATTAACCAAATTCGTATGAAGATTGGTGTAATGTTTGGTAACCCTGAAACTACTACCGGTGGTAACGCAC
TTAAATTCTACGCATCGGTTCGTTTAGATATTCGCCGCATCGGCGCAGTTAAAGCTGGCGATGAAGTTGTTGGTAACGAA
ACTCGCGTTAAAGTGGTTAAAAACAAAATTGCACCACCGTTTAAACAGGCTGAATTCCAGATTATGTATGGTGAAGGTTT
TAACCGCTACGGTGAGCTGGTTGACCTAGGTGTTAAAGAGAAGTTGGTTGATAAAGCCGGTGCTTGGTTCTCTTACAAAG
GCAATAAAATAGGTCAAGGTAAAGCAAACGCTTCAACCTACTTAAAAGAGCATCCAGAAGTTGCTCAAGAAATTGAGATG
ACGATTCGTAACAACCTGTTAAATAAGATTGAGCTCGAAGAGCAAGAGCCTGCCGCTGAAGCTCCAGTAGATCAAGAAGC
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7C9JYN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

81.402

94.524

0.769
  recA Vibrio cholerae strain A1552

81.402

94.524

0.769
  recA Pseudomonas stutzeri DSM 10701

73.41

99.712

0.732
  recA Acinetobacter baumannii D1279779

72.886

98.847

0.72
  recA Acinetobacter baylyi ADP1

74.468

94.813

0.706
  recA Glaesserella parasuis strain SC1401

72.531

93.372

0.677
  recA Neisseria gonorrhoeae MS11

70.06

96.254

0.674
  recA Neisseria gonorrhoeae MS11

70.06

96.254

0.674
  recA Neisseria gonorrhoeae strain FA1090

70.06

96.254

0.674
  recA Ralstonia pseudosolanacearum GMI1000

71.704

89.625

0.643
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.972

94.236

0.631
  recA Helicobacter pylori strain NCTC11637

61.85

99.712

0.617
  recA Helicobacter pylori 26695

61.561

99.712

0.614
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.388

96.542

0.602
  recA Streptococcus pneumoniae TIGR4

58.873

100

0.602
  recA Streptococcus pneumoniae D39

58.873

100

0.602
  recA Streptococcus pneumoniae R6

58.873

100

0.602
  recA Streptococcus pneumoniae Rx1

58.873

100

0.602
  recA Streptococcus mitis SK321

59.366

100

0.594
  recA Streptococcus mitis NCTC 12261

58.96

99.712

0.588
  recA Bacillus subtilis subsp. subtilis str. 168

62.733

92.795

0.582
  recA Streptococcus pyogenes NZ131

61.3

93.084

0.571
  recA Lactococcus lactis subsp. cremoris KW2

58.631

96.83

0.568
  recA Streptococcus mutans UA159

56.447

100

0.568
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.145

91.354

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

60.188

91.931

0.553