Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LQF73_RS08150 Genome accession   NZ_CP088015
Coordinates   1639008..1640108 (-) Length   366 a.a.
NCBI ID   WP_005718632.1    Uniprot ID   A0A125P6R9
Organism   Lactobacillus crispatus strain M247     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1630112..1640861 1639008..1640108 within 0


Gene organization within MGE regions


Location: 1630112..1640861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQF73_RS08115 (LQF73_08065) secA 1630112..1632511 (-) 2400 WP_005722715.1 preprotein translocase subunit SecA -
  LQF73_RS08120 (LQF73_08070) hpf 1632653..1633198 (-) 546 WP_005718638.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  LQF73_RS08125 (LQF73_08075) - 1633279..1633974 (-) 696 WP_005718637.1 ComF family protein -
  LQF73_RS08130 (LQF73_08080) - 1633971..1635251 (-) 1281 WP_005718636.1 DEAD/DEAH box helicase -
  LQF73_RS08135 (LQF73_08085) - 1635297..1635959 (+) 663 WP_005718635.1 YigZ family protein -
  LQF73_RS08140 (LQF73_08090) - 1635994..1637151 (-) 1158 WP_005718634.1 glycosyltransferase family 4 protein -
  LQF73_RS08145 (LQF73_08095) rny 1637255..1638892 (-) 1638 WP_005718633.1 ribonuclease Y -
  LQF73_RS08150 (LQF73_08100) recA 1639008..1640108 (-) 1101 WP_005718632.1 recombinase RecA Machinery gene
  LQF73_RS08155 (LQF73_08105) pgsA 1640301..1640861 (-) 561 WP_005718631.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 39650.12 Da        Isoelectric Point: 6.3297

>NTDB_id=632438 LQF73_RS08150 WP_005718632.1 1639008..1640108(-) (recA) [Lactobacillus crispatus strain M247]
MAKDEKQAALDAALKKIEKNFGKGAVMRMGEKADTQISTVPTGSLALDAAIGVGGYPRGRIIEVYGPESSGKTTVALHAV
AEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMG
DAHVGLQARLMSQALRKLSGNISKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGDVLGN
RVKIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKSDRIGQGRENAKKYLEEHPDIYQDIQ
KQVRQAYGIDEKSIADREDPEKIKEKREEAKTEKEAATDKKSEQAK

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=632438 LQF73_RS08150 WP_005718632.1 1639008..1640108(-) (recA) [Lactobacillus crispatus strain M247]
ATGGCCAAAGACGAAAAACAGGCTGCTTTAGATGCAGCGCTTAAAAAAATCGAAAAGAATTTCGGTAAGGGTGCTGTAAT
GCGGATGGGCGAAAAAGCTGATACGCAAATTTCAACAGTGCCAACAGGTTCATTAGCTTTAGATGCTGCTATCGGTGTAG
GTGGATATCCTCGTGGTCGTATTATTGAAGTTTATGGCCCAGAATCATCTGGTAAGACTACGGTAGCCCTTCATGCTGTA
GCTGAGGTGCAAAAGCGTGGTGGTACTGCAGCATATATTGATGCCGAAAATGCAATGGATCCTGCTTACGCTGAAGCTTT
AGGTGTAGATATTGATTCACTAATTTTGTCACAACCTAATACTGGTGAAGAAGGTTTGCAAATCGCTGATACTTTGATTT
CCAGTGGGGCAATTGACATTGTAGTAGTCGACTCTGTTGCTGCCTTAGTACCACGAGCAGAAATTGAAGGCGAGATGGGA
GATGCCCATGTTGGTTTACAAGCGAGATTAATGAGTCAAGCTTTGCGTAAGTTATCAGGTAATATTTCTAAAACCAAAAC
TATTGCCATCTTTATTAACCAGATTCGTGAAAAAGTTGGGGTAATGTTTGGTAATCCTGAAACTACCCCAGGTGGTCGTG
CTCTTAAGTTTTACTCAACTATTAGATTGGAAGTAAGAAGAGCTGAACAGATTAAGCAATCAGGAGATGTTCTTGGTAAC
AGAGTTAAAATTAAAGTTGTTAAGAACAAGGTTGCTCCACCATTTAAGGTGGCAGAAGTAGACATTATGTACGGTAAGGG
AATTTCACAAAGTGGTGAATTACTGGACATGGCTGCTGATAAGGACATTATCGATAAAGCAGGTTCTTGGTACTCTTACA
AGAGTGATCGAATTGGTCAGGGACGTGAGAATGCTAAGAAGTATCTAGAAGAGCATCCAGATATTTATCAAGATATCCAA
AAGCAAGTGCGTCAAGCTTACGGGATTGATGAAAAGTCAATTGCTGATCGTGAAGATCCAGAAAAGATCAAGGAGAAGCG
CGAAGAAGCCAAGACAGAAAAAGAAGCTGCTACAGATAAAAAGTCTGAACAAGCTAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A125P6R9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

81.269

90.437

0.735
  recA Bacillus subtilis subsp. subtilis str. 168

73.333

90.164

0.661
  recA Streptococcus pneumoniae D39

65.556

98.361

0.645
  recA Streptococcus pneumoniae R6

65.556

98.361

0.645
  recA Streptococcus pneumoniae TIGR4

65.556

98.361

0.645
  recA Streptococcus pneumoniae Rx1

65.556

98.361

0.645
  recA Streptococcus mutans UA159

63.836

99.727

0.637
  recA Streptococcus mitis NCTC 12261

67.544

93.443

0.631
  recA Streptococcus pyogenes NZ131

68.997

89.891

0.62
  recA Streptococcus mitis SK321

68.389

89.891

0.615
  recA Lactococcus lactis subsp. cremoris KW2

65.766

90.984

0.598
  recA Neisseria gonorrhoeae MS11

59.078

94.809

0.56
  recA Neisseria gonorrhoeae MS11

59.078

94.809

0.56
  recA Neisseria gonorrhoeae strain FA1090

59.078

94.809

0.56
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.112

92.623

0.538
  recA Acinetobacter baumannii D1279779

56.936

94.536

0.538
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.756

89.617

0.536
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.062

88.251

0.53
  recA Acinetobacter baylyi ADP1

59.627

87.978

0.525
  recA Helicobacter pylori 26695

55.848

93.443

0.522
  recA Helicobacter pylori strain NCTC11637

55.848

93.443

0.522
  recA Pseudomonas stutzeri DSM 10701

59.19

87.705

0.519
  recA Glaesserella parasuis strain SC1401

53.276

95.902

0.511
  recA Vibrio cholerae O1 biovar El Tor strain E7946

57.453

87.978

0.505
  recA Vibrio cholerae strain A1552

57.453

87.978

0.505
  recA Ralstonia pseudosolanacearum GMI1000

58.466

85.519

0.5