Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LPW11_RS06470 Genome accession   NZ_CP087999
Coordinates   1497817..1498815 (+) Length   332 a.a.
NCBI ID   WP_230997313.1    Uniprot ID   -
Organism   Geomonas sp. RF6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1492817..1503815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPW11_RS06450 (LPW11_06450) larC 1493333..1494487 (+) 1155 WP_230997310.1 nickel pincer cofactor biosynthesis protein LarC -
  LPW11_RS06455 (LPW11_06455) - 1494484..1494954 (+) 471 WP_230997311.1 phosphatidylglycerophosphatase A -
  LPW11_RS06460 (LPW11_06460) - 1495194..1495679 (+) 486 Protein_1272 nicotinamide-nucleotide amidohydrolase family protein -
  LPW11_RS06465 (LPW11_06465) - 1495715..1497685 (+) 1971 WP_230997312.1 ATP-binding protein -
  LPW11_RS06470 (LPW11_06470) recA 1497817..1498815 (+) 999 WP_230997313.1 recombinase RecA Machinery gene
  LPW11_RS06475 (LPW11_06475) - 1498819..1499970 (+) 1152 WP_230997314.1 type IV pilus twitching motility protein PilT -
  LPW11_RS06480 (LPW11_06480) - 1499974..1500435 (+) 462 WP_230997315.1 regulatory protein RecX -
  LPW11_RS06485 (LPW11_06485) alaS 1500513..1503143 (+) 2631 WP_230997316.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 35593.10 Da        Isoelectric Point: 5.5301

>NTDB_id=632219 LPW11_RS06470 WP_230997313.1 1497817..1498815(+) (recA) [Geomonas sp. RF6]
MLDREKAIDLALGQIEKQFGKGAIMRLGNEEALPDVAAIPTGSLSLDLALGVGGVPRGRVIEVYGPESSGKTTLALHIIA
EAMKEGGIAAFIDAEHALDIGYARKLGVKTDDLLVSQPDTGEQALEIAETLVRSGAIDVLVVDSVAALVPKAEIEGDMGD
SHMGLQARLMSQALRKLTGIISKSNCCVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRKIAALKQGNDVIGSR
TRVKVVKNKVAPPFKEVEFDILYGEGISKEGDVLDLAVEKGIVDKSGAWFSYGKDRIGQGRENSRIYLKEHPEITAEIRE
RLLAPEAAAQAV

Nucleotide


Download         Length: 999 bp        

>NTDB_id=632219 LPW11_RS06470 WP_230997313.1 1497817..1498815(+) (recA) [Geomonas sp. RF6]
ATGCTCGACAGGGAGAAGGCGATTGACCTGGCACTCGGCCAGATAGAGAAACAGTTCGGCAAAGGTGCCATCATGAGGCT
CGGCAACGAGGAGGCGCTCCCGGACGTGGCAGCCATCCCCACCGGCTCCCTCTCGCTGGACCTGGCGCTCGGCGTAGGCG
GCGTACCCCGCGGTCGCGTCATCGAGGTATACGGTCCCGAGTCCTCCGGCAAGACGACCCTCGCGCTGCACATCATCGCG
GAGGCGATGAAGGAAGGTGGCATCGCCGCCTTCATCGACGCCGAGCACGCGCTCGACATCGGCTACGCGAGGAAGCTCGG
GGTGAAGACCGACGACCTCCTCGTCTCCCAGCCGGACACCGGCGAGCAGGCGCTGGAGATCGCCGAGACCCTCGTCAGAT
CGGGCGCCATCGACGTCCTCGTCGTCGACTCCGTCGCGGCCCTCGTGCCGAAAGCGGAGATCGAGGGCGACATGGGCGAT
TCCCACATGGGTCTGCAGGCCCGCCTCATGTCGCAGGCGTTGCGCAAGCTCACCGGCATCATCTCCAAGAGCAACTGCTG
CGTCATCTTCATCAACCAGATCAGGATGAAGATCGGCGTCATGTTCGGCAACCCCGAGACGACGACCGGCGGTAACGCCC
TGAAGTTCTACGCCTCCGTGCGCATGGACATCAGGAAGATCGCCGCACTGAAGCAGGGGAACGACGTCATCGGCTCCCGC
ACCAGGGTGAAGGTGGTGAAGAACAAGGTCGCCCCCCCCTTCAAGGAAGTGGAATTCGACATCCTCTACGGCGAAGGGAT
CTCCAAGGAAGGGGACGTCCTCGACCTCGCCGTGGAGAAGGGGATCGTGGACAAGAGCGGAGCCTGGTTCTCCTACGGCA
AGGACCGCATCGGCCAGGGTCGCGAGAACTCCCGCATCTATCTGAAGGAGCACCCGGAGATCACCGCAGAGATCCGGGAG
AGGCTGCTCGCCCCCGAGGCAGCCGCCCAGGCGGTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

67.781

99.096

0.672
  recA Bacillus subtilis subsp. subtilis str. 168

68.944

96.988

0.669
  recA Vibrio cholerae strain A1552

67.378

98.795

0.666
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.378

98.795

0.666
  recA Helicobacter pylori 26695

67.173

99.096

0.666
  recA Acinetobacter baylyi ADP1

67.178

98.193

0.66
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

69.085

95.482

0.66
  recA Acinetobacter baumannii D1279779

66.871

98.193

0.657
  recA Glaesserella parasuis strain SC1401

68.025

96.084

0.654
  recA Neisseria gonorrhoeae strain FA1090

67.391

96.988

0.654
  recA Neisseria gonorrhoeae MS11

67.391

96.988

0.654
  recA Neisseria gonorrhoeae MS11

67.391

96.988

0.654
  recA Pseudomonas stutzeri DSM 10701

66.975

97.59

0.654
  recA Ralstonia pseudosolanacearum GMI1000

69.805

92.771

0.648
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

66.254

97.289

0.645
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.84

99.699

0.627
  recA Latilactobacillus sakei subsp. sakei 23K

63.665

96.988

0.617
  recA Streptococcus pneumoniae R6

62.963

97.59

0.614
  recA Streptococcus pneumoniae Rx1

62.963

97.59

0.614
  recA Streptococcus pneumoniae D39

62.963

97.59

0.614
  recA Streptococcus pneumoniae TIGR4

62.963

97.59

0.614
  recA Streptococcus mitis SK321

62.346

97.59

0.608
  recA Streptococcus mitis NCTC 12261

62.346

97.59

0.608
  recA Streptococcus pyogenes NZ131

61.728

97.59

0.602
  recA Lactococcus lactis subsp. cremoris KW2

60.429

98.193

0.593
  recA Streptococcus mutans UA159

60.494

97.59

0.59