Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LOH54_RS00875 Genome accession   NZ_CP087998
Coordinates   162266..163309 (+) Length   347 a.a.
NCBI ID   WP_283949354.1    Uniprot ID   -
Organism   Sulfurimonas sp. HSL-3221     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 157266..168309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOH54_RS00845 (LOH54_00845) tsaD 157268..158245 (+) 978 WP_231019705.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  LOH54_RS00850 (LOH54_00850) tpx 158342..158845 (+) 504 WP_231019707.1 thiol peroxidase -
  LOH54_RS00855 (LOH54_00855) - 158934..159692 (+) 759 WP_231019708.1 TIGR04219 family outer membrane beta-barrel protein -
  LOH54_RS00860 (LOH54_00860) - 159783..160466 (+) 684 WP_231019709.1 TIGR04219 family outer membrane beta-barrel protein -
  LOH54_RS00865 (LOH54_00865) - 160463..161251 (-) 789 WP_231019710.1 UDP-N-acetylmuramate dehydrogenase -
  LOH54_RS00870 (LOH54_00870) - 161253..162116 (-) 864 WP_231019711.1 MqnA/MqnD/SBP family protein -
  LOH54_RS00875 (LOH54_00875) recA 162266..163309 (+) 1044 WP_283949354.1 recombinase RecA Machinery gene
  LOH54_RS00880 (LOH54_00880) eno 163306..164574 (+) 1269 WP_231019713.1 phosphopyruvate hydratase -
  LOH54_RS00885 (LOH54_00885) - 164608..164901 (+) 294 WP_231019714.1 hypothetical protein -
  LOH54_RS00890 (LOH54_00890) - 164906..165379 (+) 474 WP_231019716.1 AMIN domain-containing protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37810.44 Da        Isoelectric Point: 4.9780

>NTDB_id=632202 LOH54_RS00875 WP_283949354.1 162266..163309(+) (recA) [Sulfurimonas sp. HSL-3221]
MHMDANKQKSLELALKQIDKAFGKGTLMRLGDKEIEPISSISTGSIGLDLALGINGVPEGRVIEIYGPESSGKTTLALQI
TSEAQKKGGVCAFIDAEHALDIGYAKNLGVDVENLLVSQPDYGEQALDIVETLARSGAVDLIVVDSVAALTPKVEIEGEM
NDQQVGVQARLMSKALRKITGVLHKMNTTIIFINQIRMKIGTMGYGSPETTTGGNALKFYASVRIDVRKIATLKQGESQI
GNRVKAKVIKNKVAPPFRQAEFDIMFGEGISKEGELVDYGVKLDIIDKSGAWFSYEDVKLGQGRENVKQKFKEEPALAVE
IENKIRNAMGMSNIMQMDESEMNEVDE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=632202 LOH54_RS00875 WP_283949354.1 162266..163309(+) (recA) [Sulfurimonas sp. HSL-3221]
ATGCACATGGACGCGAATAAGCAAAAATCACTCGAACTGGCGCTGAAGCAGATTGACAAGGCATTCGGCAAGGGGACGCT
GATGCGTCTGGGAGACAAGGAGATCGAGCCGATCAGTTCCATCAGCACCGGCTCCATCGGTCTGGACCTGGCCCTGGGGA
TCAACGGGGTGCCGGAAGGGCGCGTCATCGAGATCTACGGACCGGAGAGTTCGGGGAAAACGACCCTGGCCCTGCAGATC
ACGTCCGAGGCCCAGAAAAAAGGGGGTGTGTGCGCCTTCATCGACGCCGAACACGCGCTGGATATCGGGTATGCGAAAAA
CCTTGGCGTCGACGTGGAGAACCTGCTTGTTTCCCAGCCCGACTATGGTGAACAGGCTCTCGACATCGTCGAAACCCTGG
CACGTTCGGGGGCAGTCGACCTGATCGTGGTCGACTCCGTCGCGGCACTGACCCCGAAGGTGGAGATCGAGGGGGAGATG
AACGACCAGCAGGTCGGTGTCCAGGCGCGTCTGATGTCCAAGGCGCTGCGGAAGATTACCGGGGTACTGCACAAGATGAA
CACGACGATCATCTTCATCAACCAGATCCGGATGAAGATCGGCACGATGGGGTACGGTTCGCCGGAAACGACGACGGGGG
GGAACGCGCTTAAATTCTACGCCTCCGTGCGCATCGACGTCCGGAAAATCGCGACGCTGAAGCAGGGCGAAAGCCAGATC
GGGAACCGGGTCAAGGCGAAGGTCATCAAGAACAAAGTGGCCCCGCCGTTCCGCCAGGCGGAGTTCGACATCATGTTCGG
AGAGGGGATCTCCAAAGAGGGCGAATTGGTGGATTATGGGGTAAAACTTGATATAATTGATAAGAGCGGAGCGTGGTTCA
GCTACGAAGATGTCAAACTGGGTCAGGGGCGTGAAAACGTCAAGCAAAAGTTTAAAGAGGAACCGGCGCTCGCTGTTGAA
ATCGAGAACAAGATACGTAATGCCATGGGCATGAGCAATATCATGCAGATGGATGAATCAGAAATGAATGAGGTTGATGA
ATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori 26695

74.64

100

0.746
  recA Helicobacter pylori strain NCTC11637

74.352

100

0.744
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

75.439

98.559

0.744
  recA Neisseria gonorrhoeae strain FA1090

61.449

99.424

0.611
  recA Neisseria gonorrhoeae MS11

61.449

99.424

0.611
  recA Neisseria gonorrhoeae MS11

61.449

99.424

0.611
  recA Acinetobacter baumannii D1279779

60.819

98.559

0.599
  recA Acinetobacter baylyi ADP1

62.385

94.236

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.329

95.389

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

61.398

94.813

0.582
  recA Ralstonia pseudosolanacearum GMI1000

63.175

90.778

0.573
  recA Pseudomonas stutzeri DSM 10701

61.42

93.372

0.573
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.104

96.542

0.571
  recA Vibrio cholerae strain A1552

59.104

96.542

0.571
  recA Glaesserella parasuis strain SC1401

60.991

93.084

0.568
  recA Lactococcus lactis subsp. cremoris KW2

57.018

98.559

0.562
  recA Streptococcus pneumoniae D39

54.624

99.712

0.545
  recA Streptococcus pneumoniae TIGR4

54.624

99.712

0.545
  recA Streptococcus pneumoniae Rx1

54.624

99.712

0.545
  recA Streptococcus pneumoniae R6

54.624

99.712

0.545
  recA Streptococcus mitis SK321

54.203

99.424

0.539
  recA Streptococcus mitis NCTC 12261

54.07

99.135

0.536
  recA Latilactobacillus sakei subsp. sakei 23K

56.024

95.677

0.536
  recA Streptococcus pyogenes NZ131

56.707

94.524

0.536
  recA Streptococcus mutans UA159

52.874

100

0.53
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.098

94.524

0.53