Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LNN31_RS09260 Genome accession   NZ_CP087994
Coordinates   1996515..1997597 (-) Length   360 a.a.
NCBI ID   WP_070372192.1    Uniprot ID   A0A231NWB9
Organism   Acetobacterium wieringae strain Y     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1991515..2002597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LNN31_RS09245 (LNN31_09220) purB 1992321..1993754 (-) 1434 WP_070371365.1 adenylosuccinate lyase -
  LNN31_RS09250 (LNN31_09225) - 1993937..1994743 (-) 807 WP_323396125.1 TIGR00282 family metallophosphoesterase -
  LNN31_RS09255 (LNN31_09230) rny 1994801..1996345 (-) 1545 WP_139142350.1 ribonuclease Y -
  LNN31_RS09260 (LNN31_09235) recA 1996515..1997597 (-) 1083 WP_070372192.1 recombinase RecA Machinery gene
  LNN31_RS09265 (LNN31_09240) - 1997669..1998907 (-) 1239 WP_070372193.1 competence/damage-inducible protein A -
  LNN31_RS09270 (LNN31_09245) pgsA 1998958..1999497 (-) 540 WP_070372194.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LNN31_RS09275 (LNN31_09250) rimO 1999481..2000845 (-) 1365 WP_228879752.1 30S ribosomal protein S12 methylthiotransferase RimO -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38747.13 Da        Isoelectric Point: 4.7968

>NTDB_id=632163 LNN31_RS09260 WP_070372192.1 1996515..1997597(-) (recA) [Acetobacterium wieringae strain Y]
MAEKSKINSEELTDKQKALDAALRNIEKSFGKGSVMRLGDEAAKLNVEVISTSSIGLDMALGVGGVPRGRVVEIYGPESS
GKTTIALHIIAEAQKTGGNAAFVDAEHALDPTYAKALGVDIDNLLVAQPDTGEQAMEIVEALVRSNAIDVIVIDSVAALV
PRAEIDGEMGDSHMGLQARLMSQALRKLTGVIKKSNTTTIFINQLRDKIGVMFGNPETTTGGKALKFYASVRIDVRRIES
LKKGTEIIGNRTRAKIVKNKIAPPFKQAEFDIMYGKGISKEGDLLDVGVDFGIVDKSGSWFSYNEQRLGQGRDNSKEFLI
ANPDVADAIEAEIRAKNAASKMTAEPEAVEADLLEDEEIE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=632163 LNN31_RS09260 WP_070372192.1 1996515..1997597(-) (recA) [Acetobacterium wieringae strain Y]
ATGGCTGAAAAATCAAAAATAAATAGTGAAGAATTAACCGATAAACAAAAGGCTCTGGATGCAGCTCTACGAAACATCGA
AAAGAGTTTTGGTAAAGGTTCGGTCATGCGCCTCGGTGATGAAGCTGCCAAACTGAATGTCGAAGTCATTTCGACTTCAT
CCATCGGCCTGGATATGGCATTGGGTGTGGGCGGCGTACCCCGGGGTCGGGTGGTGGAAATCTACGGTCCGGAATCCTCC
GGGAAGACCACGATTGCCCTTCACATCATTGCTGAAGCGCAAAAAACTGGCGGTAATGCCGCCTTCGTCGATGCTGAGCA
TGCCCTGGATCCGACCTATGCCAAGGCTCTGGGCGTCGATATTGATAATCTGCTGGTAGCCCAACCGGATACCGGCGAAC
AGGCCATGGAAATTGTTGAAGCCCTGGTGCGCAGTAATGCCATTGACGTCATTGTCATCGACTCGGTGGCAGCCCTGGTG
CCCCGAGCCGAAATCGATGGTGAAATGGGGGATTCCCACATGGGTCTCCAGGCCCGACTGATGTCCCAGGCACTTAGAAA
GCTGACTGGGGTCATTAAAAAATCGAACACCACCACCATCTTTATCAATCAGTTGCGCGATAAAATCGGGGTGATGTTTG
GTAATCCCGAAACCACCACCGGCGGGAAGGCCCTTAAATTTTATGCCTCGGTACGAATTGACGTCCGCCGGATTGAATCC
CTGAAAAAAGGCACCGAAATTATTGGTAACCGGACCCGGGCGAAGATTGTCAAAAACAAAATTGCGCCGCCCTTTAAACA
GGCTGAGTTTGACATTATGTATGGTAAGGGTATTTCCAAAGAAGGGGATCTTCTTGATGTTGGCGTCGATTTTGGAATCG
TCGACAAATCCGGCTCCTGGTTCTCCTATAATGAGCAACGACTGGGACAGGGTCGGGATAACTCCAAGGAGTTTTTAATA
GCCAACCCCGATGTTGCCGATGCCATCGAAGCCGAAATCCGGGCCAAAAATGCGGCCAGCAAAATGACGGCTGAACCCGA
AGCGGTTGAAGCAGACCTGCTCGAAGATGAAGAGATTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A231NWB9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

63.006

96.111

0.606
  recA Neisseria gonorrhoeae MS11

63.188

95.833

0.606
  recA Neisseria gonorrhoeae MS11

63.188

95.833

0.606
  recA Neisseria gonorrhoeae strain FA1090

63.188

95.833

0.606
  recA Latilactobacillus sakei subsp. sakei 23K

61.561

96.111

0.592
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.939

91.111

0.592
  recA Streptococcus pyogenes NZ131

61.272

96.111

0.589
  recA Glaesserella parasuis strain SC1401

60.399

97.5

0.589
  recA Streptococcus mitis NCTC 12261

55.352

100

0.589
  recA Helicobacter pylori 26695

65.528

89.444

0.586
  recA Bacillus subtilis subsp. subtilis str. 168

65.325

89.722

0.586
  recA Pseudomonas stutzeri DSM 10701

61.765

94.444

0.583
  recA Helicobacter pylori strain NCTC11637

65.217

89.444

0.583
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.217

89.444

0.583
  recA Vibrio cholerae strain A1552

65.109

89.167

0.581
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.109

89.167

0.581
  recA Ralstonia pseudosolanacearum GMI1000

65.517

88.611

0.581
  recA Lactococcus lactis subsp. cremoris KW2

60.116

96.111

0.578
  recA Streptococcus mutans UA159

59.71

95.833

0.572
  recA Acinetobacter baumannii D1279779

64.174

89.167

0.572
  recA Streptococcus pneumoniae D39

58.841

95.833

0.564
  recA Streptococcus pneumoniae Rx1

58.841

95.833

0.564
  recA Streptococcus pneumoniae R6

58.841

95.833

0.564
  recA Streptococcus pneumoniae TIGR4

58.841

95.833

0.564
  recA Streptococcus mitis SK321

58.841

95.833

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.574

91.389

0.544