Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LP117_RS10985 Genome accession   NZ_CP087806
Coordinates   2162204..2163262 (-) Length   352 a.a.
NCBI ID   WP_078275069.1    Uniprot ID   -
Organism   Moraxella bovis strain SAM57939     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2157204..2168262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LP117_RS10970 (LP117_10880) lptG 2158406..2159494 (+) 1089 WP_112741785.1 LPS export ABC transporter permease LptG -
  LP117_RS10975 (LP117_10885) hemA 2159875..2161209 (+) 1335 WP_078275065.1 glutamyl-tRNA reductase -
  LP117_RS10980 (LP117_10890) - 2161231..2162199 (-) 969 WP_158079708.1 regulatory protein RecX -
  LP117_RS10985 (LP117_10895) recA 2162204..2163262 (-) 1059 WP_078275069.1 recombinase RecA Machinery gene
  LP117_RS10990 (LP117_10900) yaaA 2163453..2164235 (-) 783 WP_112741786.1 peroxide stress protein YaaA -
  LP117_RS10995 (LP117_10905) - 2164378..2165448 (+) 1071 WP_078275062.1 enoyl-CoA hydratase/isomerase family protein -
  LP117_RS11000 (LP117_10910) - 2165983..2167560 (-) 1578 WP_264675988.1 reverse transcriptase domain-containing protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37863.60 Da        Isoelectric Point: 4.8055

>NTDB_id=631572 LP117_RS10985 WP_078275069.1 2162204..2163262(-) (recA) [Moraxella bovis strain SAM57939]
MEGNKEKALQMALAQIEKAFGKNTIMNLGDESIKVDVETISTGSLGLDIALGIGGLPKGRIIEIFGPESSGKTTLTLQAI
AECQKQGGKCAFIDAEHALDPIYAKKLGVNLNELMVSQPDNGEQALEIVDMLVRSGAVDLIVVDSVAALTPKAEIEGEMG
DSHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDKEEIIGS
ETRVKVIKNKMAPPFRQTEFDIMYGEGINRLGEIVDIGASLDIVGKSGAWYSYEGSKIGQGKANACQFLAENPAIAQEIK
AKIRELKLANVVPVAPSDDDGEVPEYVEGMDD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=631572 LP117_RS10985 WP_078275069.1 2162204..2163262(-) (recA) [Moraxella bovis strain SAM57939]
ATTGAAGGCAACAAAGAAAAAGCGTTGCAAATGGCATTGGCTCAGATTGAAAAGGCATTCGGCAAAAACACCATCATGAA
TCTGGGCGATGAGTCTATCAAGGTAGATGTTGAGACCATTTCCACAGGCTCGCTTGGGCTTGACATTGCTCTGGGGATTG
GCGGTTTGCCAAAGGGGCGTATCATTGAAATTTTCGGGCCTGAAAGCTCGGGCAAAACCACGCTCACCCTACAAGCGATT
GCCGAATGCCAAAAACAAGGCGGAAAATGTGCGTTCATTGACGCAGAACATGCCCTAGACCCCATTTATGCCAAAAAATT
GGGTGTAAATTTGAACGAACTTATGGTATCTCAGCCCGACAACGGCGAGCAAGCCCTTGAAATCGTGGACATGCTTGTGC
GTTCTGGGGCGGTGGATTTGATTGTGGTGGACTCGGTTGCTGCCTTGACCCCAAAAGCTGAGATTGAAGGCGAAATGGGC
GACAGCCACATGGGTCTGCAAGCACGTCTGATGAGCCAAGCCTTGCGTAAAATCACGGGTAACGCCAAACGCTCTAACTG
CATGGTGATTTTTATCAACCAAATCCGCATGAAAATCGGCGTAATGTTCGGCTCGCCTGAGACGACAACAGGCGGTAACG
CCCTAAAATTCTATGCCTCTGTCCGCCTAGACATTCGCCGTATCGGCTCGGTCAAGGACAAAGAAGAAATCATCGGTTCT
GAAACCCGTGTCAAGGTCATCAAAAACAAAATGGCTCCCCCGTTCCGCCAAACCGAATTTGACATCATGTATGGCGAGGG
CATTAACCGCTTGGGTGAGATTGTGGACATCGGGGCAAGCCTTGACATCGTGGGTAAATCAGGGGCATGGTACAGCTATG
AAGGCTCAAAAATCGGTCAAGGCAAAGCCAATGCCTGTCAATTTTTGGCGGAAAATCCAGCCATCGCCCAAGAGATTAAA
GCCAAAATCCGTGAGCTAAAACTTGCCAATGTCGTGCCAGTCGCCCCCAGCGATGATGACGGTGAAGTGCCTGAATATGT
CGAAGGCATGGACGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

75.072

99.148

0.744
  recA Acinetobacter baumannii D1279779

74.928

98.58

0.739
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.688

100

0.699
  recA Vibrio cholerae strain A1552

69.688

100

0.699
  recA Neisseria gonorrhoeae strain FA1090

69.164

98.58

0.682
  recA Neisseria gonorrhoeae MS11

69.164

98.58

0.682
  recA Neisseria gonorrhoeae MS11

69.164

98.58

0.682
  recA Pseudomonas stutzeri DSM 10701

73.765

92.045

0.679
  recA Glaesserella parasuis strain SC1401

68.195

99.148

0.676
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.889

97.443

0.642
  recA Ralstonia pseudosolanacearum GMI1000

70.968

88.068

0.625
  recA Helicobacter pylori 26695

66.873

91.761

0.614
  recA Helicobacter pylori strain NCTC11637

66.563

91.761

0.611
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.443

92.898

0.608
  recA Bacillus subtilis subsp. subtilis str. 168

65.528

91.477

0.599
  recA Streptococcus pneumoniae D39

61.111

92.045

0.562
  recA Streptococcus pneumoniae Rx1

61.111

92.045

0.562
  recA Streptococcus pneumoniae R6

61.111

92.045

0.562
  recA Streptococcus pneumoniae TIGR4

61.111

92.045

0.562
  recA Streptococcus mitis NCTC 12261

60.802

92.045

0.56
  recA Streptococcus pyogenes NZ131

60.802

92.045

0.56
  recA Streptococcus mitis SK321

60.494

92.045

0.557
  recA Streptococcus mutans UA159

60.185

92.045

0.554
  recA Lactococcus lactis subsp. cremoris KW2

58.896

92.614

0.545
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

90.909

0.545
  recA Latilactobacillus sakei subsp. sakei 23K

59.375

90.909

0.54