Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | LP127_RS02410 | Genome accession | NZ_CP087771 |
| Coordinates | 475641..476699 (-) | Length | 352 a.a. |
| NCBI ID | WP_078275069.1 | Uniprot ID | - |
| Organism | Moraxella bovis strain SAM109244 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 440785..500701 | 475641..476699 | within | 0 |
Gene organization within MGE regions
Location: 440785..500701
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LP127_RS02220 (LP127_02210) | - | 440785..441484 (+) | 700 | WP_228157684.1 | IS1 family transposase | - |
| LP127_RS02225 (LP127_02215) | - | 441519..441725 (-) | 207 | WP_112741774.1 | hypothetical protein | - |
| LP127_RS02230 (LP127_02220) | - | 442260..443774 (+) | 1515 | WP_078274617.1 | RNA ligase | - |
| LP127_RS02235 (LP127_02225) | - | 443771..443965 (+) | 195 | WP_078274616.1 | hypothetical protein | - |
| LP127_RS02240 (LP127_02230) | - | 444122..444586 (+) | 465 | WP_078274615.1 | hypothetical protein | - |
| LP127_RS02245 (LP127_02235) | - | 444665..445318 (+) | 654 | WP_078274614.1 | phosphoesterase | - |
| LP127_RS02250 (LP127_02240) | - | 445407..446282 (+) | 876 | WP_228157756.1 | hypothetical protein | - |
| LP127_RS02255 (LP127_02245) | - | 446439..446591 (-) | 153 | WP_158079673.1 | hypothetical protein | - |
| LP127_RS02260 (LP127_02250) | - | 446805..448508 (+) | 1704 | WP_264675991.1 | AMP-binding protein | - |
| LP127_RS02265 (LP127_02255) | rph | 448643..449359 (+) | 717 | WP_078274611.1 | ribonuclease PH | - |
| LP127_RS02270 (LP127_02260) | - | 449359..449811 (+) | 453 | WP_078274610.1 | hypothetical protein | - |
| LP127_RS02275 (LP127_02265) | - | 449873..450940 (-) | 1068 | WP_264675990.1 | hypothetical protein | - |
| LP127_RS02280 (LP127_02270) | - | 451167..451409 (-) | 243 | WP_112741778.1 | YheV family putative metal-binding protein | - |
| LP127_RS02285 (LP127_02275) | - | 451852..452100 (-) | 249 | WP_112741779.1 | hypothetical protein | - |
| LP127_RS02290 (LP127_02280) | - | 452396..453157 (-) | 762 | WP_208624034.1 | integrase core domain-containing protein | - |
| LP127_RS02295 (LP127_02285) | - | 453235..453934 (+) | 700 | WP_228157684.1 | IS1 family transposase | - |
| LP127_RS14170 | - | 453966..454043 (+) | 78 | Protein_449 | esterase | - |
| LP127_RS02300 (LP127_02290) | - | 454113..455111 (-) | 999 | WP_078275108.1 | NAD-dependent epimerase/dehydratase family protein | - |
| LP127_RS02305 (LP127_02295) | - | 455155..456105 (-) | 951 | WP_228157757.1 | 3-oxoacyl-[acyl-carrier-protein] synthase III C-terminal domain-containing protein | - |
| LP127_RS14175 | - | 456102..456338 (-) | 237 | WP_420832151.1 | phosphatase PAP2 family protein | - |
| LP127_RS02310 (LP127_02300) | - | 456378..456764 (+) | 387 | WP_112741781.1 | helix-turn-helix domain-containing protein | - |
| LP127_RS02315 (LP127_02305) | rlmH | 456968..457447 (+) | 480 | WP_078275106.1 | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | - |
| LP127_RS02320 (LP127_02310) | - | 457578..457955 (-) | 378 | WP_158079711.1 | VanZ family protein | - |
| LP127_RS02325 (LP127_02315) | ribF | 458024..459037 (+) | 1014 | WP_228157758.1 | riboflavin biosynthesis protein RibF | - |
| LP127_RS02330 (LP127_02320) | - | 459149..459853 (-) | 705 | WP_029103867.1 | CHAP domain-containing protein | - |
| LP127_RS02335 (LP127_02325) | - | 460027..460593 (+) | 567 | WP_143821735.1 | hypothetical protein | - |
| LP127_RS02340 (LP127_02330) | lpxC | 460839..461786 (-) | 948 | WP_112742780.1 | UDP-3-O-acyl-N-acetylglucosamine deacetylase | - |
| LP127_RS02345 (LP127_02335) | - | 461901..462599 (-) | 699 | WP_079325037.1 | metal-dependent hydrolase | - |
| LP127_RS02360 (LP127_02350) | gltX | 463001..464512 (-) | 1512 | WP_078275102.1 | glutamate--tRNA ligase | - |
| LP127_RS02365 (LP127_02355) | - | 464762..465523 (-) | 762 | WP_264675989.1 | endonuclease/exonuclease/phosphatase family protein | - |
| LP127_RS02370 (LP127_02360) | - | 465682..467769 (+) | 2088 | WP_112741783.1 | M3 family metallopeptidase | - |
| LP127_RS02375 (LP127_02365) | - | 467987..468850 (+) | 864 | WP_208624062.1 | PAAR domain-containing protein | - |
| LP127_RS02380 (LP127_02370) | - | 468825..469586 (-) | 762 | WP_208624034.1 | integrase core domain-containing protein | - |
| LP127_RS02385 (LP127_02375) | - | 469664..470363 (+) | 700 | WP_228157684.1 | IS1 family transposase | - |
| LP127_RS02390 (LP127_02380) | lptF | 470560..471846 (+) | 1287 | WP_112741784.1 | LPS export ABC transporter permease LptF | - |
| LP127_RS02395 (LP127_02385) | lptG | 471843..472931 (+) | 1089 | WP_112741785.1 | LPS export ABC transporter permease LptG | - |
| LP127_RS02400 (LP127_02390) | hemA | 473312..474646 (+) | 1335 | WP_078275065.1 | glutamyl-tRNA reductase | - |
| LP127_RS02405 (LP127_02395) | - | 474668..475636 (-) | 969 | WP_158079708.1 | regulatory protein RecX | - |
| LP127_RS02410 (LP127_02400) | recA | 475641..476699 (-) | 1059 | WP_078275069.1 | recombinase RecA | Machinery gene |
| LP127_RS02415 (LP127_02405) | yaaA | 476890..477672 (-) | 783 | WP_112741786.1 | peroxide stress protein YaaA | - |
| LP127_RS02420 (LP127_02410) | - | 477815..478885 (+) | 1071 | WP_078275062.1 | enoyl-CoA hydratase/isomerase family protein | - |
| LP127_RS02425 (LP127_02415) | - | 479420..480997 (-) | 1578 | WP_264675988.1 | reverse transcriptase domain-containing protein | - |
| LP127_RS02430 (LP127_02420) | - | 481342..482880 (-) | 1539 | WP_112741788.1 | catalase | - |
| LP127_RS02435 (LP127_02425) | - | 483181..483924 (-) | 744 | WP_228144857.1 | epoxyqueuosine reductase QueH | - |
| LP127_RS02440 (LP127_02430) | iscX | 484020..484220 (+) | 201 | WP_029103819.1 | Fe-S cluster assembly protein IscX | - |
| LP127_RS02445 (LP127_02435) | - | 484207..484416 (+) | 210 | WP_078275059.1 | hypothetical protein | - |
| LP127_RS02450 (LP127_02440) | - | 484419..485267 (-) | 849 | WP_078275058.1 | SPFH domain-containing protein | - |
| LP127_RS02455 (LP127_02445) | - | 485389..485838 (-) | 450 | WP_078275057.1 | NfeD family protein | - |
| LP127_RS02460 (LP127_02450) | - | 485984..486295 (+) | 312 | WP_264722302.1 | hypothetical protein | - |
| LP127_RS02465 (LP127_02455) | ribB | 486582..487673 (-) | 1092 | WP_264675986.1 | 3,4-dihydroxy-2-butanone-4-phosphate synthase | - |
| LP127_RS02470 (LP127_02460) | xerD | 487899..488852 (+) | 954 | WP_078275198.1 | site-specific tyrosine recombinase XerD | - |
| LP127_RS02475 (LP127_02465) | - | 488842..489627 (-) | 786 | WP_264683536.1 | restriction endonuclease subunit S | - |
| LP127_RS02480 (LP127_02470) | - | 489581..491005 (-) | 1425 | WP_264683432.1 | restriction endonuclease subunit S | - |
| LP127_RS02485 (LP127_02475) | - | 491038..493023 (-) | 1986 | WP_078275196.1 | N-6 DNA methylase | - |
| LP127_RS02490 (LP127_02480) | - | 493055..494389 (-) | 1335 | WP_078275195.1 | valine--pyruvate transaminase | - |
| LP127_RS02495 (LP127_02485) | - | 494509..495120 (+) | 612 | WP_112741794.1 | class I SAM-dependent methyltransferase | - |
| LP127_RS02500 (LP127_02490) | - | 495141..495857 (+) | 717 | WP_078275193.1 | hypothetical protein | - |
| LP127_RS02505 (LP127_02495) | - | 496066..497400 (+) | 1335 | WP_112741795.1 | deoxyguanosinetriphosphate triphosphohydrolase | - |
| LP127_RS02510 (LP127_02500) | - | 497544..497837 (+) | 294 | WP_029103533.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| LP127_RS02515 (LP127_02505) | - | 497830..498102 (+) | 273 | WP_228157760.1 | type II toxin-antitoxin system YafQ family toxin | - |
| LP127_RS02520 (LP127_02510) | - | 498167..498622 (-) | 456 | WP_264675985.1 | type IV secretion protein Rhs | - |
| LP127_RS02525 (LP127_02515) | - | 498707..499084 (+) | 378 | WP_264675984.1 | hypothetical protein | - |
| LP127_RS02530 (LP127_02520) | - | 499442..500701 (+) | 1260 | WP_264675983.1 | replication-associated recombination protein A | - |
Sequence
Protein
Download Length: 352 a.a. Molecular weight: 37863.60 Da Isoelectric Point: 4.8055
>NTDB_id=631367 LP127_RS02410 WP_078275069.1 475641..476699(-) (recA) [Moraxella bovis strain SAM109244]
MEGNKEKALQMALAQIEKAFGKNTIMNLGDESIKVDVETISTGSLGLDIALGIGGLPKGRIIEIFGPESSGKTTLTLQAI
AECQKQGGKCAFIDAEHALDPIYAKKLGVNLNELMVSQPDNGEQALEIVDMLVRSGAVDLIVVDSVAALTPKAEIEGEMG
DSHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDKEEIIGS
ETRVKVIKNKMAPPFRQTEFDIMYGEGINRLGEIVDIGASLDIVGKSGAWYSYEGSKIGQGKANACQFLAENPAIAQEIK
AKIRELKLANVVPVAPSDDDGEVPEYVEGMDD
MEGNKEKALQMALAQIEKAFGKNTIMNLGDESIKVDVETISTGSLGLDIALGIGGLPKGRIIEIFGPESSGKTTLTLQAI
AECQKQGGKCAFIDAEHALDPIYAKKLGVNLNELMVSQPDNGEQALEIVDMLVRSGAVDLIVVDSVAALTPKAEIEGEMG
DSHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDKEEIIGS
ETRVKVIKNKMAPPFRQTEFDIMYGEGINRLGEIVDIGASLDIVGKSGAWYSYEGSKIGQGKANACQFLAENPAIAQEIK
AKIRELKLANVVPVAPSDDDGEVPEYVEGMDD
Nucleotide
Download Length: 1059 bp
>NTDB_id=631367 LP127_RS02410 WP_078275069.1 475641..476699(-) (recA) [Moraxella bovis strain SAM109244]
ATTGAAGGCAACAAAGAAAAAGCGTTGCAAATGGCATTGGCTCAGATTGAAAAGGCATTCGGCAAAAACACCATCATGAA
TCTGGGCGATGAGTCTATCAAGGTAGATGTTGAGACCATTTCCACAGGCTCGCTTGGGCTTGACATTGCTCTGGGGATTG
GCGGTTTGCCAAAGGGGCGTATCATTGAAATTTTCGGGCCTGAAAGCTCGGGCAAAACCACGCTCACCCTACAAGCGATT
GCCGAATGCCAAAAACAAGGCGGAAAATGTGCGTTCATTGACGCAGAACATGCCCTAGACCCCATTTATGCCAAAAAATT
GGGTGTAAATTTGAACGAACTTATGGTATCTCAGCCCGACAACGGCGAGCAAGCCCTTGAAATCGTGGACATGCTTGTGC
GTTCTGGGGCGGTGGATTTGATTGTGGTGGACTCGGTTGCTGCCTTGACCCCAAAAGCTGAGATTGAAGGCGAAATGGGC
GACAGCCACATGGGTCTGCAAGCACGTCTGATGAGCCAAGCCTTGCGTAAAATCACGGGTAACGCCAAACGCTCTAACTG
CATGGTGATTTTTATCAACCAAATCCGCATGAAAATCGGCGTAATGTTCGGCTCGCCTGAGACGACAACAGGCGGTAACG
CCCTAAAATTCTATGCCTCTGTCCGCCTAGACATTCGCCGTATCGGCTCGGTCAAGGACAAAGAAGAAATCATCGGTTCT
GAAACCCGTGTCAAGGTCATCAAAAACAAAATGGCTCCCCCGTTCCGCCAAACCGAATTTGACATCATGTATGGCGAGGG
CATTAACCGCTTGGGTGAGATTGTGGACATCGGGGCAAGCCTTGACATCGTGGGTAAATCAGGGGCATGGTACAGCTATG
AAGGCTCAAAAATCGGTCAAGGCAAAGCCAATGCCTGTCAATTTTTGGCGGAAAATCCAGCCATCGCCCAAGAGATTAAA
GCCAAAATCCGTGAGCTAAAACTTGCCAATGTCGTGCCAGTCGCCCCCAGCGATGATGACGGTGAAGTGCCTGAATATGT
CGAAGGCATGGACGACTAA
ATTGAAGGCAACAAAGAAAAAGCGTTGCAAATGGCATTGGCTCAGATTGAAAAGGCATTCGGCAAAAACACCATCATGAA
TCTGGGCGATGAGTCTATCAAGGTAGATGTTGAGACCATTTCCACAGGCTCGCTTGGGCTTGACATTGCTCTGGGGATTG
GCGGTTTGCCAAAGGGGCGTATCATTGAAATTTTCGGGCCTGAAAGCTCGGGCAAAACCACGCTCACCCTACAAGCGATT
GCCGAATGCCAAAAACAAGGCGGAAAATGTGCGTTCATTGACGCAGAACATGCCCTAGACCCCATTTATGCCAAAAAATT
GGGTGTAAATTTGAACGAACTTATGGTATCTCAGCCCGACAACGGCGAGCAAGCCCTTGAAATCGTGGACATGCTTGTGC
GTTCTGGGGCGGTGGATTTGATTGTGGTGGACTCGGTTGCTGCCTTGACCCCAAAAGCTGAGATTGAAGGCGAAATGGGC
GACAGCCACATGGGTCTGCAAGCACGTCTGATGAGCCAAGCCTTGCGTAAAATCACGGGTAACGCCAAACGCTCTAACTG
CATGGTGATTTTTATCAACCAAATCCGCATGAAAATCGGCGTAATGTTCGGCTCGCCTGAGACGACAACAGGCGGTAACG
CCCTAAAATTCTATGCCTCTGTCCGCCTAGACATTCGCCGTATCGGCTCGGTCAAGGACAAAGAAGAAATCATCGGTTCT
GAAACCCGTGTCAAGGTCATCAAAAACAAAATGGCTCCCCCGTTCCGCCAAACCGAATTTGACATCATGTATGGCGAGGG
CATTAACCGCTTGGGTGAGATTGTGGACATCGGGGCAAGCCTTGACATCGTGGGTAAATCAGGGGCATGGTACAGCTATG
AAGGCTCAAAAATCGGTCAAGGCAAAGCCAATGCCTGTCAATTTTTGGCGGAAAATCCAGCCATCGCCCAAGAGATTAAA
GCCAAAATCCGTGAGCTAAAACTTGCCAATGTCGTGCCAGTCGCCCCCAGCGATGATGACGGTGAAGTGCCTGAATATGT
CGAAGGCATGGACGACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.