Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LP096_RS08750 Genome accession   NZ_CP087765
Coordinates   1711840..1712898 (+) Length   352 a.a.
NCBI ID   WP_078275069.1    Uniprot ID   -
Organism   Moraxella bovis strain SAM109246     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1702328..1720552 1711840..1712898 within 0


Gene organization within MGE regions


Location: 1702328..1720552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LP096_RS08700 (LP096_08580) - 1702328..1702555 (-) 228 WP_264689284.1 hypothetical protein -
  LP096_RS08705 (LP096_08585) - 1702701..1703150 (+) 450 WP_078275057.1 NfeD family protein -
  LP096_RS08710 (LP096_08590) - 1703272..1704120 (+) 849 WP_078275058.1 SPFH domain-containing protein -
  LP096_RS08715 (LP096_08595) - 1704123..1704332 (-) 210 WP_078275059.1 hypothetical protein -
  LP096_RS08720 (LP096_08600) iscX 1704319..1704519 (-) 201 WP_029103819.1 Fe-S cluster assembly protein IscX -
  LP096_RS08725 (LP096_08605) - 1704615..1705358 (+) 744 WP_228144857.1 epoxyqueuosine reductase QueH -
  LP096_RS08730 (LP096_08610) - 1705659..1707197 (+) 1539 WP_112741788.1 catalase -
  LP096_RS08735 (LP096_08615) - 1707560..1709119 (+) 1560 WP_264689285.1 reverse transcriptase domain-containing protein -
  LP096_RS08740 (LP096_08620) - 1709654..1710724 (-) 1071 WP_078275062.1 enoyl-CoA hydratase/isomerase family protein -
  LP096_RS08745 (LP096_08625) yaaA 1710867..1711649 (+) 783 WP_112741786.1 peroxide stress protein YaaA -
  LP096_RS08750 (LP096_08630) recA 1711840..1712898 (+) 1059 WP_078275069.1 recombinase RecA Machinery gene
  LP096_RS08755 (LP096_08635) - 1712903..1713871 (+) 969 WP_158079708.1 regulatory protein RecX -
  LP096_RS08760 (LP096_08640) hemA 1713893..1715227 (-) 1335 WP_078275065.1 glutamyl-tRNA reductase -
  LP096_RS08765 (LP096_08645) lptG 1715608..1716696 (-) 1089 WP_112741785.1 LPS export ABC transporter permease LptG -
  LP096_RS08770 (LP096_08650) lptF 1716693..1717979 (-) 1287 WP_112741784.1 LPS export ABC transporter permease LptF -
  LP096_RS08775 (LP096_08655) - 1718529..1718530 (-) 2 WP_228157684.1 IS1 family transposase -
  LP096_RS08780 (LP096_08660) - 1718953..1719714 (+) 762 WP_208624034.1 integrase core domain-containing protein -
  LP096_RS08785 (LP096_08665) - 1719689..1720552 (-) 864 WP_208624062.1 PAAR domain-containing protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37863.60 Da        Isoelectric Point: 4.8055

>NTDB_id=631327 LP096_RS08750 WP_078275069.1 1711840..1712898(+) (recA) [Moraxella bovis strain SAM109246]
MEGNKEKALQMALAQIEKAFGKNTIMNLGDESIKVDVETISTGSLGLDIALGIGGLPKGRIIEIFGPESSGKTTLTLQAI
AECQKQGGKCAFIDAEHALDPIYAKKLGVNLNELMVSQPDNGEQALEIVDMLVRSGAVDLIVVDSVAALTPKAEIEGEMG
DSHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDKEEIIGS
ETRVKVIKNKMAPPFRQTEFDIMYGEGINRLGEIVDIGASLDIVGKSGAWYSYEGSKIGQGKANACQFLAENPAIAQEIK
AKIRELKLANVVPVAPSDDDGEVPEYVEGMDD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=631327 LP096_RS08750 WP_078275069.1 1711840..1712898(+) (recA) [Moraxella bovis strain SAM109246]
ATTGAAGGCAACAAAGAAAAAGCGTTGCAAATGGCATTGGCTCAGATTGAAAAGGCATTCGGCAAAAACACCATCATGAA
TCTGGGCGATGAGTCTATCAAGGTAGATGTTGAGACCATTTCCACAGGCTCGCTTGGGCTTGACATTGCTCTGGGGATTG
GCGGTTTGCCAAAGGGGCGTATCATTGAAATTTTCGGGCCTGAAAGCTCGGGCAAAACCACGCTCACCCTACAAGCGATT
GCCGAATGCCAAAAACAAGGCGGAAAATGTGCGTTCATTGACGCAGAACATGCCCTAGACCCCATTTATGCCAAAAAATT
GGGTGTAAATTTGAACGAACTTATGGTATCTCAGCCCGACAACGGCGAGCAAGCCCTTGAAATCGTGGACATGCTTGTGC
GTTCTGGGGCGGTGGATTTGATTGTGGTGGACTCGGTTGCTGCCTTGACCCCAAAAGCTGAGATTGAAGGCGAAATGGGC
GACAGCCACATGGGTCTGCAAGCACGTCTGATGAGCCAAGCCTTGCGTAAAATCACGGGTAACGCCAAACGCTCTAACTG
CATGGTGATTTTTATCAACCAAATCCGCATGAAAATCGGCGTAATGTTCGGCTCGCCTGAGACGACAACAGGCGGTAACG
CCCTAAAATTCTATGCCTCTGTCCGCCTAGACATTCGCCGTATCGGCTCGGTCAAGGACAAAGAAGAAATCATCGGTTCT
GAAACCCGTGTCAAGGTCATCAAAAACAAAATGGCTCCCCCGTTCCGCCAAACCGAATTTGACATCATGTATGGCGAGGG
CATTAACCGCTTGGGTGAGATTGTGGACATCGGGGCAAGCCTTGACATCGTGGGTAAATCAGGGGCATGGTACAGCTATG
AAGGCTCAAAAATCGGTCAAGGCAAAGCCAATGCCTGTCAATTTTTGGCGGAAAATCCAGCCATCGCCCAAGAGATTAAA
GCCAAAATCCGTGAGCTAAAACTTGCCAATGTCGTGCCAGTCGCCCCCAGCGATGATGACGGTGAAGTGCCTGAATATGT
CGAAGGCATGGACGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

75.072

99.148

0.744
  recA Acinetobacter baumannii D1279779

74.928

98.58

0.739
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.688

100

0.699
  recA Vibrio cholerae strain A1552

69.688

100

0.699
  recA Neisseria gonorrhoeae strain FA1090

69.164

98.58

0.682
  recA Neisseria gonorrhoeae MS11

69.164

98.58

0.682
  recA Neisseria gonorrhoeae MS11

69.164

98.58

0.682
  recA Pseudomonas stutzeri DSM 10701

73.765

92.045

0.679
  recA Glaesserella parasuis strain SC1401

68.195

99.148

0.676
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.889

97.443

0.642
  recA Ralstonia pseudosolanacearum GMI1000

70.968

88.068

0.625
  recA Helicobacter pylori 26695

66.873

91.761

0.614
  recA Helicobacter pylori strain NCTC11637

66.563

91.761

0.611
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.443

92.898

0.608
  recA Bacillus subtilis subsp. subtilis str. 168

65.528

91.477

0.599
  recA Streptococcus pneumoniae D39

61.111

92.045

0.562
  recA Streptococcus pneumoniae Rx1

61.111

92.045

0.562
  recA Streptococcus pneumoniae R6

61.111

92.045

0.562
  recA Streptococcus pneumoniae TIGR4

61.111

92.045

0.562
  recA Streptococcus mitis NCTC 12261

60.802

92.045

0.56
  recA Streptococcus pyogenes NZ131

60.802

92.045

0.56
  recA Streptococcus mitis SK321

60.494

92.045

0.557
  recA Streptococcus mutans UA159

60.185

92.045

0.554
  recA Lactococcus lactis subsp. cremoris KW2

58.896

92.614

0.545
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

90.909

0.545
  recA Latilactobacillus sakei subsp. sakei 23K

59.375

90.909

0.54