Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LPW13_RS03725 Genome accession   NZ_CP087715
Coordinates   945843..946877 (+) Length   344 a.a.
NCBI ID   WP_230438104.1    Uniprot ID   -
Organism   Microbulbifer celer strain KCTC 12973     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 940843..951877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPW13_RS03705 (LPW13_03705) - 941970..942635 (+) 666 WP_230438101.1 NTP transferase domain-containing protein -
  LPW13_RS03710 (LPW13_03710) - 942526..943431 (-) 906 WP_230438102.1 zinc-dependent peptidase -
  LPW13_RS03715 (LPW13_03715) - 943521..945062 (+) 1542 WP_230438103.1 hypothetical protein -
  LPW13_RS03720 (LPW13_03720) - 945195..945689 (+) 495 WP_230439142.1 CinA family protein -
  LPW13_RS03725 (LPW13_03725) recA 945843..946877 (+) 1035 WP_230438104.1 recombinase RecA Machinery gene
  LPW13_RS03730 (LPW13_03730) - 946880..947494 (+) 615 WP_230438105.1 regulatory protein RecX -
  LPW13_RS03735 (LPW13_03735) glpK 947618..949096 (+) 1479 WP_230438106.1 glycerol kinase GlpK -
  LPW13_RS03740 (LPW13_03740) - 949237..949422 (+) 186 WP_230438107.1 Trm112 family protein -
  LPW13_RS03745 (LPW13_03745) - 949484..949849 (+) 366 WP_230438108.1 histidine triad nucleotide-binding protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37072.41 Da        Isoelectric Point: 5.0622

>NTDB_id=631170 LPW13_RS03725 WP_230438104.1 945843..946877(+) (recA) [Microbulbifer celer strain KCTC 12973]
MDSNKDKALNAALSQIERQFGKGTVMRMGDKERVRIPAISTGSLGLDVALGIGGLPRGRIVEIYGPESSGKTTLTLQVIA
EAQRKGGTCAFVDAEHALDPEYAEKLGVNVDELIVSQPDTGEQALEVADMLVRSGAVDVLVVDSVAALTPRAEIEGEMGD
SHVGLQARLMSQALRKLTGNIKNTNTLCVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKEGDEVVGNE
TRVKVVKNKVAPPFKQTEFQIMYGQGINLLGEIVDYGVKLGLVDKAGAWYSYKGDKIGQGKANAVKFLKENVDLRNEIEG
QLRAQLLGDLVPPKEEEAVEAAED

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=631170 LPW13_RS03725 WP_230438104.1 945843..946877(+) (recA) [Microbulbifer celer strain KCTC 12973]
ATGGATTCCAACAAAGACAAGGCTTTAAACGCGGCGCTGTCTCAGATCGAGCGCCAGTTCGGTAAAGGCACCGTCATGCG
CATGGGGGACAAGGAGCGCGTGCGTATCCCTGCGATCTCCACCGGCTCCCTGGGGCTGGATGTCGCTCTCGGCATTGGCG
GCCTGCCCCGTGGCCGTATCGTTGAAATCTATGGCCCGGAATCCTCTGGTAAAACCACACTGACCCTGCAGGTGATCGCC
GAAGCTCAGCGCAAGGGCGGCACCTGTGCTTTCGTGGATGCGGAGCACGCGCTCGACCCGGAGTATGCGGAGAAACTGGG
GGTAAACGTTGACGAGTTGATCGTTTCCCAGCCGGATACCGGTGAGCAGGCGCTGGAAGTGGCGGATATGCTGGTACGTT
CCGGTGCGGTTGACGTACTGGTCGTCGACTCCGTGGCGGCACTGACGCCGCGTGCGGAAATTGAAGGCGAGATGGGGGAT
TCCCACGTCGGTCTGCAGGCCCGCCTGATGTCCCAGGCCCTGCGTAAACTGACCGGCAACATCAAGAATACCAACACCCT
GTGTGTATTCATTAACCAGATCCGTATGAAGATCGGTGTGATGTTTGGCTCTCCGGAAACCACTACCGGTGGTAACGCGC
TCAAGTTCTACTCCTCGGTGCGTCTGGATATCCGTCGCATCGGCTCTGTAAAGGAAGGCGATGAGGTCGTGGGTAACGAA
ACCCGCGTGAAAGTGGTCAAGAACAAGGTGGCACCGCCATTCAAACAGACCGAGTTCCAGATCATGTACGGTCAGGGTAT
CAACCTGTTGGGGGAGATCGTCGACTATGGCGTCAAGCTGGGGTTGGTGGACAAGGCCGGTGCCTGGTACAGCTACAAGG
GCGACAAGATCGGTCAGGGCAAGGCGAATGCCGTCAAATTCCTGAAAGAAAATGTGGATCTCCGCAACGAGATCGAAGGC
CAGCTGCGCGCCCAGTTGCTGGGTGATCTGGTGCCGCCGAAAGAAGAAGAGGCCGTCGAGGCTGCGGAAGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

77.616

100

0.776
  recA Acinetobacter baylyi ADP1

74.006

95.058

0.703
  recA Acinetobacter baumannii D1279779

74.006

95.058

0.703
  recA Vibrio cholerae strain A1552

73.7

95.058

0.701
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.7

95.058

0.701
  recA Neisseria gonorrhoeae MS11

71.692

94.477

0.677
  recA Neisseria gonorrhoeae MS11

71.692

94.477

0.677
  recA Neisseria gonorrhoeae strain FA1090

71.692

94.477

0.677
  recA Glaesserella parasuis strain SC1401

71.118

93.605

0.666
  recA Ralstonia pseudosolanacearum GMI1000

72.99

90.407

0.66
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.771

92.733

0.619
  recA Helicobacter pylori strain NCTC11637

61.159

100

0.613
  recA Helicobacter pylori 26695

61.159

100

0.613
  recA Bacillus subtilis subsp. subtilis str. 168

65.109

93.314

0.608
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.538

96.221

0.602
  recA Latilactobacillus sakei subsp. sakei 23K

60.882

98.837

0.602
  recA Streptococcus mutans UA159

60.308

94.477

0.57
  recA Streptococcus pneumoniae Rx1

59.756

95.349

0.57
  recA Streptococcus mitis NCTC 12261

59.756

95.349

0.57
  recA Streptococcus mitis SK321

59.756

95.349

0.57
  recA Streptococcus pneumoniae D39

59.756

95.349

0.57
  recA Streptococcus pneumoniae R6

59.756

95.349

0.57
  recA Streptococcus pneumoniae TIGR4

59.756

95.349

0.57
  recA Streptococcus pyogenes NZ131

59.259

94.186

0.558
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.133

93.895

0.555
  recA Lactococcus lactis subsp. cremoris KW2

57.669

94.767

0.547