Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LPH35_RS02005 Genome accession   NZ_CP087711
Coordinates   431681..432745 (-) Length   354 a.a.
NCBI ID   WP_039045158.1    Uniprot ID   A0A1A9B0C4
Organism   Plesiomonas shigelloides strain 7A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 426681..437745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPH35_RS01990 csrA 427821..428006 (-) 186 WP_010864349.1 carbon storage regulator CsrA -
  LPH35_RS01995 alaS 428275..430902 (-) 2628 WP_084977691.1 alanine--tRNA ligase -
  LPH35_RS02000 - 431130..431672 (-) 543 WP_407951407.1 regulatory protein RecX -
  LPH35_RS02005 recA 431681..432745 (-) 1065 WP_039045158.1 recombinase RecA Machinery gene
  LPH35_RS02010 pncC 432824..433312 (-) 489 WP_039045159.1 nicotinamide-nucleotide amidase -
  LPH35_RS02015 mutS 433616..436189 (+) 2574 WP_230432701.1 DNA mismatch repair protein MutS -
  LPH35_RS02020 rpoS 436434..437417 (-) 984 WP_010864355.1 RNA polymerase sigma factor RpoS -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37737.04 Da        Isoelectric Point: 4.8028

>NTDB_id=631140 LPH35_RS02005 WP_039045158.1 431681..432745(-) (recA) [Plesiomonas shigelloides strain 7A]
MDENKQKALAAALGQIEKQFGKGSIMRLGDTKTLDIEAISTGSLGLDIALGIGGLPTGRIVEIFGPESSGKTTLTLSVIA
QAQKCGKTCAFIDAEHALDPVYAAKLGVQVDDLLISQPDTGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTGNIKSANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRVGAIKEGDEVVGNE
TRVKVVKNKVSPPFRQADFQIIYGGGISKEGELIDLGVKHKLVEKSGAWYSYQGEKVGQGKANSMKYLQEHPEIAAELDK
KLREMLLSAAATSAEAQANNDGDDEFGPDEDEAF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=631140 LPH35_RS02005 WP_039045158.1 431681..432745(-) (recA) [Plesiomonas shigelloides strain 7A]
ATGGACGAGAACAAACAGAAAGCCTTGGCCGCAGCGTTAGGACAGATTGAAAAGCAATTCGGTAAAGGCTCTATCATGCG
TCTGGGTGATACCAAGACGTTAGATATCGAAGCAATTTCTACCGGCTCTTTGGGTCTGGATATTGCGCTGGGTATTGGCG
GTTTGCCGACCGGCCGTATTGTTGAAATCTTTGGTCCGGAATCGTCCGGTAAAACCACCCTTACTCTGTCTGTTATTGCT
CAAGCACAAAAGTGCGGTAAAACCTGTGCTTTTATCGATGCTGAGCATGCGCTGGATCCGGTTTACGCAGCCAAACTGGG
GGTGCAGGTTGATGATCTGCTGATCTCTCAGCCAGATACCGGTGAACAAGCACTGGAAATCTGTGATGCACTGGTTCGCT
CTGGTGCGGTCGATGTGATCATCGTTGACTCCGTGGCCGCACTGACACCAAAAGCCGAAATCGAAGGCGAGATGGGCGAC
TCTCACGTTGGTTTGCAAGCCCGTTTGATGTCACAGGCGCTGCGTAAGTTGACCGGTAACATCAAGAGCGCCAACTGCTT
AGTGGTCTTCATCAACCAGATCCGCATGAAGATCGGTGTGATGTTCGGTAACCCAGAAACCACCACCGGCGGTAACGCAC
TGAAGTTCTACGCCTCTGTTCGTCTGGATATTCGCCGTGTTGGCGCTATCAAAGAAGGCGATGAAGTGGTCGGTAACGAA
ACACGCGTGAAAGTGGTGAAAAACAAAGTATCGCCACCGTTCCGTCAGGCCGATTTCCAGATTATTTATGGCGGCGGGAT
CTCGAAAGAGGGCGAGCTGATCGATCTGGGCGTGAAGCACAAGCTGGTGGAAAAATCCGGTGCGTGGTACAGCTATCAGG
GCGAGAAAGTGGGTCAGGGCAAGGCCAACTCGATGAAGTACCTGCAAGAGCATCCAGAAATTGCGGCTGAGCTGGATAAA
AAACTGCGTGAAATGCTGTTAAGTGCAGCGGCGACTTCTGCGGAAGCGCAAGCGAACAACGATGGCGATGACGAGTTTGG
TCCAGATGAGGACGAAGCATTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A9B0C4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

79.037

99.718

0.788
  recA Vibrio cholerae O1 biovar El Tor strain E7946

79.037

99.718

0.788
  recA Pseudomonas stutzeri DSM 10701

77.907

97.175

0.757
  recA Glaesserella parasuis strain SC1401

73.011

99.435

0.726
  recA Acinetobacter baylyi ADP1

71.06

98.588

0.701
  recA Acinetobacter baumannii D1279779

72.455

94.35

0.684
  recA Neisseria gonorrhoeae MS11

73.62

92.09

0.678
  recA Neisseria gonorrhoeae MS11

73.62

92.09

0.678
  recA Neisseria gonorrhoeae strain FA1090

73.62

92.09

0.678
  recA Ralstonia pseudosolanacearum GMI1000

75.563

87.853

0.664
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.361

92.373

0.613
  recA Helicobacter pylori strain NCTC11637

64.308

91.808

0.59
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.538

93.503

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

64.486

90.678

0.585
  recA Helicobacter pylori 26695

63.692

91.808

0.585
  recA Streptococcus pneumoniae TIGR4

62.539

91.243

0.571
  recA Streptococcus pneumoniae Rx1

62.539

91.243

0.571
  recA Streptococcus pneumoniae D39

62.539

91.243

0.571
  recA Streptococcus pneumoniae R6

62.539

91.243

0.571
  recA Streptococcus mitis NCTC 12261

61.3

91.243

0.559
  recA Streptococcus mitis SK321

61.3

91.243

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

61.371

90.678

0.556
  recA Streptococcus mutans UA159

59.692

91.808

0.548
  recA Streptococcus pyogenes NZ131

59.077

91.808

0.542
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.232

92.655

0.54
  recA Lactococcus lactis subsp. cremoris KW2

58.204

91.243

0.531