Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LOS78_RS10505 Genome accession   NZ_CP087598
Coordinates   690293..691363 (+) Length   356 a.a.
NCBI ID   WP_230378185.1    Uniprot ID   -
Organism   Paracoccus sp. MA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 685293..696363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOS78_RS10485 (LOS78_10485) - 685315..686115 (+) 801 WP_230378182.1 hypothetical protein -
  LOS78_RS10490 (LOS78_10490) - 686191..687342 (+) 1152 WP_230378183.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  LOS78_RS10495 (LOS78_10495) - 687401..689445 (+) 2045 Protein_679 ATP-binding protein -
  LOS78_RS10500 (LOS78_10500) - 689464..690048 (-) 585 WP_230378184.1 sulfotransferase family protein -
  LOS78_RS10505 (LOS78_10505) recA 690293..691363 (+) 1071 WP_230378185.1 recombinase RecA Machinery gene
  LOS78_RS10510 (LOS78_10510) alaS 691643..694300 (+) 2658 WP_230378186.1 alanine--tRNA ligase -
  LOS78_RS10515 (LOS78_10515) - 694297..694587 (+) 291 WP_230378187.1 DUF1330 domain-containing protein -
  LOS78_RS10520 (LOS78_10520) - 694655..695449 (+) 795 WP_230378188.1 class II glutamine amidotransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38208.42 Da        Isoelectric Point: 4.8123

>NTDB_id=630339 LOS78_RS10505 WP_230378185.1 690293..691363(+) (recA) [Paracoccus sp. MA]
MAGATLFDMNDKRSADKQKALDSALAQIERQFGKGSIMKLGADSPVAEIEATSTGSLGLDIALGIGGLPKGRIIEIFGPE
SSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELLISQPDTGEQALEIVDTLVRSGAVSLVVVDSVAA
LTPKSEIEGDMGDMQMGSQARLMSQAMRKLTASIGRSNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRT
GSIKDRDEVVGNSTRVKVVKNKVAPPFRQVEFDIMYGEGISKVGELIDLGIKAGVVEKSGSWYSYGDERIGQGRENAKQY
LRDNPDVAYAIEDKIRASHGLDFGATEDGDEALTED

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=630339 LOS78_RS10505 WP_230378185.1 690293..691363(+) (recA) [Paracoccus sp. MA]
ATGGCAGGGGCAACACTTTTCGACATGAACGACAAGCGATCCGCAGACAAGCAGAAGGCGCTGGACAGCGCGCTGGCCCA
GATCGAACGGCAATTCGGCAAGGGCTCGATCATGAAGCTGGGCGCCGACAGTCCGGTGGCCGAGATCGAGGCGACCTCGA
CCGGCTCGCTGGGGCTCGACATCGCCCTGGGGATCGGCGGCCTGCCCAAGGGCCGGATCATCGAGATCTTTGGCCCGGAA
AGCTCGGGCAAGACCACGCTGACGCTGCATGTCGTGGCCGAGGAGCAGAAGAAGGGCGGCGTCTGCGCCTTCGTCGATGC
CGAACATGCGCTGGACCCGCAATATGCCAAGAAGCTGGGCGTCAACCTGGACGAGCTCTTGATCAGCCAGCCCGACACCG
GCGAACAGGCGCTGGAGATCGTGGATACGCTGGTGCGCTCGGGCGCGGTCAGCCTGGTCGTGGTCGATTCGGTGGCGGCG
CTGACGCCCAAGTCCGAGATCGAGGGCGACATGGGCGACATGCAGATGGGCAGCCAGGCCCGGCTGATGAGCCAGGCGAT
GCGCAAGCTGACCGCCAGCATCGGGCGGTCGAACTGCATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGA
TGTTCGGCAACCCCGAGACCACCACCGGCGGCAACGCCCTGAAATTCTACGCCTCGGTGCGCCTGGATATCCGCCGCACC
GGCTCGATCAAGGACCGCGACGAGGTGGTCGGCAACTCGACCCGGGTCAAGGTGGTCAAGAACAAGGTGGCGCCGCCCTT
CCGCCAGGTCGAGTTCGACATCATGTATGGCGAGGGCATCTCGAAGGTCGGCGAACTGATCGACCTCGGCATCAAGGCCG
GCGTGGTCGAGAAATCGGGCAGCTGGTATTCCTATGGCGATGAGCGCATCGGCCAGGGCCGCGAGAATGCCAAGCAATAT
CTGCGCGACAATCCCGACGTGGCCTATGCCATCGAGGACAAGATCCGTGCCAGCCACGGCCTGGATTTCGGGGCTACGGA
GGATGGCGACGAGGCGCTGACCGAGGATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

72.866

92.135

0.671
  recA Neisseria gonorrhoeae MS11

69.162

93.82

0.649
  recA Neisseria gonorrhoeae MS11

69.162

93.82

0.649
  recA Neisseria gonorrhoeae strain FA1090

69.162

93.82

0.649
  recA Vibrio cholerae strain A1552

71.028

90.169

0.64
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.028

90.169

0.64
  recA Glaesserella parasuis strain SC1401

70.938

89.888

0.638
  recA Pseudomonas stutzeri DSM 10701

70.497

90.449

0.638
  recA Bacillus subtilis subsp. subtilis str. 168

67.378

92.135

0.621
  recA Acinetobacter baumannii D1279779

68.536

90.169

0.618
  recA Acinetobacter baylyi ADP1

68.536

90.169

0.618
  recA Helicobacter pylori 26695

63.93

95.787

0.612
  recA Helicobacter pylori strain NCTC11637

63.93

95.787

0.612
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.159

92.135

0.61
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.644

91.573

0.601
  recA Streptococcus mitis SK321

60.684

98.596

0.598
  recA Streptococcus pneumoniae R6

59.437

99.719

0.593
  recA Streptococcus pneumoniae Rx1

59.437

99.719

0.593
  recA Streptococcus pneumoniae D39

59.437

99.719

0.593
  recA Streptococcus pneumoniae TIGR4

59.437

99.719

0.593
  recA Streptococcus mitis NCTC 12261

61.176

95.506

0.584
  recA Latilactobacillus sakei subsp. sakei 23K

60.177

95.225

0.573
  recA Lactococcus lactis subsp. cremoris KW2

59.172

94.944

0.562
  recA Streptococcus pyogenes NZ131

60.79

92.416

0.562
  recA Streptococcus mutans UA159

60

92.697

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.185

91.011

0.548