Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IUZ65_RS13960 Genome accession   NZ_CP087590
Coordinates   3056709..3057743 (-) Length   344 a.a.
NCBI ID   WP_195704287.1    Uniprot ID   -
Organism   Vibrio sp. VB16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3051709..3062743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUZ65_RS13950 (IUZ65_013950) alaS 3052825..3055407 (-) 2583 WP_195704285.1 alanine--tRNA ligase -
  IUZ65_RS13955 (IUZ65_013955) - 3055831..3056478 (+) 648 WP_195704286.1 cell wall hydrolase -
  IUZ65_RS13960 (IUZ65_013960) recA 3056709..3057743 (-) 1035 WP_195704287.1 recombinase RecA Machinery gene
  IUZ65_RS13965 (IUZ65_013965) - 3057910..3059364 (+) 1455 WP_195704288.1 ATP-binding cassette domain-containing protein -
  IUZ65_RS13970 (IUZ65_013970) carB 3059473..3062703 (-) 3231 WP_195704289.1 carbamoyl-phosphate synthase large subunit -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 36987.58 Da        Isoelectric Point: 5.5938

>NTDB_id=630236 IUZ65_RS13960 WP_195704287.1 3056709..3057743(-) (recA) [Vibrio sp. VB16]
MDENKKKALSAALGQIEKQFGKGSIMRLGDNRTMDVETISTGSLALDIALGAGGLPMGRIVEVYGPESSGKTTLTLEAIS
AAQKQGKTCAFIDAEHALDPIYAKALGVNIDELLVSQPDTGEQALEIVDALARSGAVDVVVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAIKDGDEVIGNE
TRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVKSKIVEKAGAWYSYKGDKIGQGKANAGKYMRENPATALEIDT
RLRELLLAPVVEEVVEKQVPQEEL

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=630236 IUZ65_RS13960 WP_195704287.1 3056709..3057743(-) (recA) [Vibrio sp. VB16]
ATGGATGAGAACAAAAAGAAGGCGCTTTCAGCGGCTCTAGGTCAGATTGAAAAACAATTTGGTAAAGGTTCAATTATGCG
TCTTGGCGATAACCGCACTATGGACGTAGAGACCATCTCAACAGGTTCTCTAGCTCTGGATATAGCGCTAGGCGCTGGTG
GGCTTCCTATGGGGCGTATCGTAGAAGTCTATGGTCCTGAATCATCAGGTAAAACAACCCTAACACTTGAAGCAATTTCT
GCGGCGCAAAAACAAGGTAAAACTTGTGCATTTATTGATGCTGAACATGCCCTAGACCCAATTTACGCTAAGGCGTTAGG
TGTAAATATTGATGAGTTACTTGTGTCACAACCAGATACTGGTGAGCAAGCCTTAGAAATTGTTGATGCACTTGCTCGTT
CTGGTGCTGTTGATGTTGTTGTTGTCGATTCCGTCGCGGCGTTGACACCTAAAGCTGAAATTGAAGGTGAGATGGGTGAC
AGCCACATGGGCCTTCAGGCTCGTATGCTTTCTCAAGCAATGCGTAAGTTAACGGGTAACCTTAAACAGTCAAATTGCAT
GTGTATTTTCATCAACCAAATCCGTATGAAGATCGGTGTTATGTTTGGCTCTCCAGAGACGACAACGGGTGGTAATGCCC
TTAAATTTTATGCTTCTGTTCGCCTCGATATCCGCCGTACTGGCGCCATTAAAGATGGTGATGAAGTTATTGGTAACGAA
ACACGTATCAAGGTTGTTAAAAACAAAATAGCAGCACCATTTAAACAAGCTGAAACACAGATTCTTTACGGTAAGGGTTT
CAATCGTGAAGGTGAATTGATTGATTTGGGTGTTAAGAGCAAAATTGTTGAAAAAGCAGGAGCTTGGTACAGCTATAAAG
GCGATAAAATTGGTCAAGGTAAGGCTAACGCAGGTAAATACATGCGTGAGAACCCTGCGACTGCACTAGAAATTGATACG
AGACTACGAGAGCTTCTTTTAGCGCCAGTTGTTGAAGAAGTCGTAGAAAAGCAAGTTCCTCAGGAAGAGTTGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

88.45

95.64

0.846
  recA Vibrio cholerae O1 biovar El Tor strain E7946

88.45

95.64

0.846
  recA Pseudomonas stutzeri DSM 10701

72.046

100

0.727
  recA Acinetobacter baylyi ADP1

71.72

99.709

0.715
  recA Acinetobacter baumannii D1279779

74.618

95.058

0.709
  recA Glaesserella parasuis strain SC1401

70.37

94.186

0.663
  recA Neisseria gonorrhoeae MS11

68.712

94.767

0.651
  recA Neisseria gonorrhoeae MS11

68.712

94.767

0.651
  recA Neisseria gonorrhoeae strain FA1090

68.712

94.767

0.651
  recA Ralstonia pseudosolanacearum GMI1000

70.418

90.407

0.637
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.204

92.733

0.605
  recA Helicobacter pylori strain NCTC11637

60.058

99.709

0.599
  recA Helicobacter pylori 26695

59.767

99.709

0.596
  recA Bacillus subtilis subsp. subtilis str. 168

63.863

93.314

0.596
  recA Streptococcus pneumoniae R6

63.158

93.895

0.593
  recA Streptococcus pneumoniae TIGR4

63.158

93.895

0.593
  recA Streptococcus pneumoniae D39

63.158

93.895

0.593
  recA Streptococcus pneumoniae Rx1

63.158

93.895

0.593
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.261

96.802

0.593
  recA Streptococcus mitis NCTC 12261

62.848

93.895

0.59
  recA Streptococcus mitis SK321

62.848

93.895

0.59
  recA Streptococcus mutans UA159

62.154

94.477

0.587
  recA Streptococcus pyogenes NZ131

62.154

94.477

0.587
  recA Latilactobacillus sakei subsp. sakei 23K

58.944

99.128

0.584
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.182

95.64

0.576
  recA Lactococcus lactis subsp. cremoris KW2

60.991

93.895

0.573