Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LOZ77_RS06470 Genome accession   NZ_CP087588
Coordinates   1308446..1309516 (-) Length   356 a.a.
NCBI ID   WP_230281358.1    Uniprot ID   -
Organism   Croceicoccus sp. Ery15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1303446..1314516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ77_RS06460 - 1303837..1305597 (+) 1761 WP_230281356.1 cation:proton antiporter -
  LOZ77_RS06465 alaS 1305621..1308281 (-) 2661 WP_230281357.1 alanine--tRNA ligase -
  LOZ77_RS06470 recA 1308446..1309516 (-) 1071 WP_230281358.1 recombinase RecA Machinery gene
  LOZ77_RS06475 - 1309631..1311994 (-) 2364 WP_370638052.1 response regulator -
  LOZ77_RS06480 - 1312066..1312620 (-) 555 WP_230281359.1 DUF2062 domain-containing protein -
  LOZ77_RS06485 smpB 1312814..1313296 (-) 483 WP_230281360.1 SsrA-binding protein SmpB -
  LOZ77_RS06490 dapA 1313370..1314260 (-) 891 WP_230281361.1 4-hydroxy-tetrahydrodipicolinate synthase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38100.47 Da        Isoelectric Point: 5.0722

>NTDB_id=630207 LOZ77_RS06470 WP_230281358.1 1308446..1309516(-) (recA) [Croceicoccus sp. Ery15]
MAANLKLVNGESDVDRQKALDAALAQIDRAFGKGSAMKLGSREAMNVEAISTGSLGLDIALGIGGLPKGRIIEIYGPESS
GKTTLALHAIAEAQKAGGTAAFVDAEHALDPVYAKKLGVDIDELIVSQPDTGEQALEITDTLVRSNAIDVLVVDSVAALV
PRAEIEGEMGDSHVGLQARLMSQALRKLTGSINRSKCMVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQ
IKDRDDIVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKVGEILDLGVKAGLVEKSGAWFSYDSVRIGQGRENAKTFLK
ENPELREKLEAAIRGKTDQVAEEMMTNPGNDDSGDE

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=630207 LOZ77_RS06470 WP_230281358.1 1308446..1309516(-) (recA) [Croceicoccus sp. Ery15]
ATGGCAGCAAATCTGAAACTCGTGAACGGGGAATCCGACGTGGATCGTCAAAAGGCGCTGGACGCCGCACTCGCCCAGAT
CGACCGGGCATTCGGCAAGGGCTCGGCCATGAAGCTGGGCAGTCGCGAAGCGATGAATGTAGAGGCGATCTCGACCGGGT
CGCTGGGTCTGGACATTGCGCTGGGCATCGGCGGCCTGCCCAAGGGCCGCATTATCGAGATTTACGGTCCCGAAAGCTCG
GGCAAGACCACGCTGGCGCTGCATGCCATCGCAGAAGCGCAAAAGGCGGGCGGCACGGCGGCCTTCGTGGATGCCGAGCA
TGCGCTCGACCCTGTCTATGCCAAAAAGCTGGGCGTGGACATTGACGAGCTGATCGTTTCGCAGCCCGACACGGGTGAGC
AGGCGCTGGAAATCACCGATACGCTGGTGCGGTCGAACGCCATCGACGTGCTGGTGGTCGATTCGGTCGCTGCGCTGGTG
CCCCGCGCGGAGATCGAGGGCGAGATGGGCGACAGCCATGTCGGCCTGCAGGCCCGCTTGATGAGCCAGGCGCTGCGCAA
GCTGACCGGTTCGATCAACCGTTCCAAGTGCATGGTGATCTTCATCAACCAGGTCCGCATGAAGATCGGCGTAATGTACG
GCAACCCCGAGACGACGACGGGCGGCAACGCGCTGAAATTCTATGCCTCGGTCCGCCTCGACATTCGCCGCACCGGCCAG
ATCAAGGACCGCGACGATATCGTCGGCAACGCCACTCGCGTGAAAGTGGTGAAGAACAAGGTCGCGCCGCCGTTCAAGCA
GGTCGAGTTCGACATCATGTATGGCGAAGGCATTTCCAAGGTTGGCGAGATACTCGACCTAGGGGTCAAGGCAGGTCTGG
TCGAGAAGTCGGGCGCATGGTTCAGCTATGACAGCGTGCGGATCGGGCAGGGGCGCGAGAATGCGAAGACCTTCCTGAAG
GAGAACCCCGAACTGCGCGAAAAGCTGGAGGCGGCGATTCGCGGCAAAACCGATCAGGTGGCCGAGGAAATGATGACCAA
TCCCGGCAATGACGACAGCGGCGACGAATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

68.222

96.348

0.657
  recA Vibrio cholerae strain A1552

68.935

94.944

0.654
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.935

94.944

0.654
  recA Glaesserella parasuis strain SC1401

67.147

97.472

0.654
  recA Neisseria gonorrhoeae MS11

67.544

96.067

0.649
  recA Neisseria gonorrhoeae MS11

67.544

96.067

0.649
  recA Neisseria gonorrhoeae strain FA1090

67.544

96.067

0.649
  recA Acinetobacter baumannii D1279779

69.255

90.449

0.626
  recA Acinetobacter baylyi ADP1

69.255

90.449

0.626
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.988

92.135

0.626
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.058

96.91

0.621
  recA Bacillus subtilis subsp. subtilis str. 168

69.062

89.888

0.621
  recA Helicobacter pylori strain NCTC11637

64.392

94.663

0.61
  recA Helicobacter pylori 26695

64.095

94.663

0.607
  recA Ralstonia pseudosolanacearum GMI1000

69.805

86.517

0.604
  recA Streptococcus pneumoniae Rx1

60.694

97.191

0.59
  recA Streptococcus pneumoniae TIGR4

60.694

97.191

0.59
  recA Streptococcus pneumoniae R6

60.694

97.191

0.59
  recA Streptococcus pneumoniae D39

60.694

97.191

0.59
  recA Latilactobacillus sakei subsp. sakei 23K

62.202

94.382

0.587
  recA Streptococcus mitis NCTC 12261

63.889

91.011

0.581
  recA Streptococcus mitis SK321

63.889

91.011

0.581
  recA Streptococcus pyogenes NZ131

63.19

91.573

0.579
  recA Streptococcus mutans UA159

62.346

91.011

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.154

91.292

0.567
  recA Lactococcus lactis subsp. cremoris KW2

61.111

91.011

0.556