Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LOD97_RS07545 Genome accession   NZ_CP087569
Coordinates   1432514..1433644 (-) Length   376 a.a.
NCBI ID   WP_002822182.1    Uniprot ID   -
Organism   Oenococcus oeni strain SD-2a     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1427514..1438644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOD97_RS07530 (LOD97_07530) - 1428173..1430020 (-) 1848 WP_002822184.1 ABC transporter ATP-binding protein -
  LOD97_RS07535 (LOD97_07535) - 1430013..1431764 (-) 1752 WP_002822183.1 ABC transporter ATP-binding protein -
  LOD97_RS07540 (LOD97_07540) - 1431810..1432463 (-) 654 WP_002816806.1 hemolysin III family protein -
  LOD97_RS07545 (LOD97_07545) recA 1432514..1433644 (-) 1131 WP_002822182.1 recombinase RecA Machinery gene
  LOD97_RS07550 (LOD97_07550) pgsA 1433761..1434321 (-) 561 WP_002816807.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LOD97_RS07555 (LOD97_07555) - 1434318..1435295 (-) 978 WP_002816808.1 RodZ family helix-turn-helix domain-containing protein -
  LOD97_RS07560 (LOD97_07560) yfmH 1435316..1436593 (-) 1278 WP_002816810.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  LOD97_RS07565 (LOD97_07565) - 1436583..1437836 (-) 1254 WP_002816813.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 40446.42 Da        Isoelectric Point: 4.7260

>NTDB_id=630090 LOD97_RS07545 WP_002822182.1 1432514..1433644(-) (recA) [Oenococcus oeni strain SD-2a]
MASGRKAALDAALKKIEKDFGKGSIMRLGENVHTQVDVISTGSLKLDIALGVGGYPKGRIIEVFGPESSGKTTVALHAVA
EVQKQGGTAAYIDAENSLDAKYAQALGVNVDDLLLSQPDTGEQGLEIADDLVNSGAIDLLVIDSVAALVPRAEIEGEMGD
SHVGLQARLMSQALRKLAGTLNRTDTIAIFINQIREKIGIMFGNPETTPGGRALKFYSTVRLEVRRSAQIKDGTNIVGNN
TKIKVVKNKVAPPFKVAEVDIMYGKGISQTGELIDLAVDKDIINKSGAWYAYQGEKIGQGRVNAISWLDSPEHKKEHDEI
FTSVRDQYGIGEKKDSDEDPGDNKKSKDSASDPFDDPNYNPKSSDPGDDLSDDDIY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=630090 LOD97_RS07545 WP_002822182.1 1432514..1433644(-) (recA) [Oenococcus oeni strain SD-2a]
ATGGCTAGTGGAAGAAAAGCTGCACTCGATGCAGCATTAAAGAAAATTGAAAAAGATTTTGGTAAGGGATCGATTATGCG
TTTGGGTGAAAATGTTCATACACAGGTCGATGTTATTTCAACAGGTTCTTTAAAACTCGATATTGCTTTAGGGGTTGGTG
GCTATCCGAAGGGAAGAATCATTGAAGTGTTCGGACCGGAATCTTCAGGTAAAACAACTGTTGCTTTGCATGCGGTTGCT
GAAGTCCAAAAACAGGGCGGCACGGCGGCTTATATCGATGCCGAAAACTCTTTGGATGCGAAATACGCGCAAGCTCTTGG
CGTAAATGTTGACGATTTGCTGCTTAGCCAACCGGATACCGGAGAACAGGGTTTGGAAATCGCTGATGATTTGGTTAATT
CCGGGGCAATCGATCTATTGGTTATCGATTCGGTCGCGGCTTTGGTCCCACGCGCTGAAATCGAAGGAGAAATGGGCGAT
TCCCATGTTGGTTTACAGGCTCGTTTAATGAGCCAGGCACTTCGGAAACTTGCCGGTACACTGAATAGAACCGATACAAT
TGCAATTTTTATTAACCAGATTCGTGAAAAAATAGGAATTATGTTTGGAAATCCAGAGACAACTCCGGGTGGCCGTGCTT
TGAAATTCTACTCGACTGTTAGACTTGAAGTACGTCGATCTGCTCAAATTAAAGATGGCACGAACATTGTTGGAAATAAT
ACCAAAATTAAAGTTGTTAAAAACAAAGTTGCTCCTCCGTTTAAAGTTGCCGAAGTTGACATTATGTACGGAAAAGGTAT
TAGCCAAACCGGAGAATTAATTGATCTTGCGGTTGATAAAGACATTATCAATAAGTCTGGTGCTTGGTATGCCTACCAAG
GAGAGAAAATCGGTCAAGGCCGTGTTAACGCTATTTCTTGGCTAGACAGTCCGGAACACAAAAAGGAACATGACGAAATT
TTCACTTCTGTCCGCGATCAATATGGAATTGGTGAAAAGAAGGATTCAGATGAAGATCCTGGAGACAACAAAAAGAGTAA
AGACTCTGCCTCGGACCCTTTCGATGATCCTAACTACAATCCTAAGTCGAGTGATCCCGGCGACGATTTATCCGACGATG
ATATTTATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

76.577

88.564

0.678
  recA Streptococcus mitis NCTC 12261

66.949

94.149

0.63
  recA Streptococcus mitis SK321

66.667

94.149

0.628
  recA Streptococcus mutans UA159

66.667

94.149

0.628
  recA Streptococcus pneumoniae TIGR4

67.63

92.021

0.622
  recA Streptococcus pneumoniae Rx1

67.63

92.021

0.622
  recA Streptococcus pneumoniae D39

67.63

92.021

0.622
  recA Streptococcus pneumoniae R6

67.63

92.021

0.622
  recA Bacillus subtilis subsp. subtilis str. 168

69.817

87.234

0.609
  recA Streptococcus pyogenes NZ131

69.091

87.766

0.606
  recA Lactococcus lactis subsp. cremoris KW2

68.182

87.766

0.598
  recA Acinetobacter baumannii D1279779

63.609

86.968

0.553
  recA Acinetobacter baylyi ADP1

62.691

86.968

0.545
  recA Ralstonia pseudosolanacearum GMI1000

64.444

83.777

0.54
  recA Neisseria gonorrhoeae MS11

63.722

84.309

0.537
  recA Neisseria gonorrhoeae MS11

63.722

84.309

0.537
  recA Neisseria gonorrhoeae strain FA1090

63.722

84.309

0.537
  recA Vibrio cholerae strain A1552

62.813

85.106

0.535
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.813

85.106

0.535
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.43

91.489

0.535
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.55

86.968

0.527
  recA Pseudomonas stutzeri DSM 10701

61.562

85.106

0.524
  recA Helicobacter pylori strain NCTC11637

58.485

87.766

0.513
  recA Helicobacter pylori 26695

58.485

87.766

0.513
  recA Glaesserella parasuis strain SC1401

62.136

82.181

0.511
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.875

84.84

0.508