Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LO006_RS08295 Genome accession   NZ_CP087348
Coordinates   1700357..1701406 (-) Length   349 a.a.
NCBI ID   WP_000344169.1    Uniprot ID   N9L2B2
Organism   Acinetobacter baumannii strain DB006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1695357..1706406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO006_RS08260 - 1695600..1696103 (+) 504 WP_001037943.1 OmpH family outer membrane protein -
  LO006_RS08265 lpxD 1696108..1697178 (+) 1071 WP_000868104.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  LO006_RS08270 fabZ 1697185..1697670 (+) 486 WP_000140523.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LO006_RS08275 lpxA 1697667..1698455 (+) 789 WP_000064875.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  LO006_RS08280 - 1698509..1699393 (-) 885 WP_001178068.1 YbgF trimerization domain-containing protein -
  LO006_RS08290 - 1699821..1700303 (-) 483 WP_000476756.1 regulatory protein RecX -
  LO006_RS08295 recA 1700357..1701406 (-) 1050 WP_000344169.1 recombinase RecA Machinery gene
  LO006_RS08300 - 1701552..1701992 (-) 441 WP_000040959.1 RNA-binding S4 domain-containing protein -
  LO006_RS08305 - 1701976..1702662 (-) 687 WP_001045479.1 HAD-IA family hydrolase -
  LO006_RS08310 - 1702834..1703193 (+) 360 WP_000798360.1 YcgJ family protein -
  LO006_RS08315 - 1703292..1703528 (+) 237 WP_000525041.1 hypothetical protein -
  LO006_RS08320 - 1703643..1703936 (+) 294 WP_000689660.1 hypothetical protein -
  LO006_RS08325 - 1703988..1704524 (-) 537 WP_000573222.1 GNAT family N-acetyltransferase -
  LO006_RS08330 gigD 1704569..1705018 (-) 450 WP_001099948.1 Lrp/AsnC family transcriptional regulator GigD -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37891.25 Da        Isoelectric Point: 4.7769

>NTDB_id=629018 LO006_RS08295 WP_000344169.1 1700357..1701406(-) (recA) [Acinetobacter baumannii strain DB006]
MDENKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
QCQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSE
TKVKVVKNKMAPPFKEAIFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRYFEENTQIAEEIER
NIREQLLTTGTNGAVQIEDEEEPDLLLES

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=629018 LO006_RS08295 WP_000344169.1 1700357..1701406(-) (recA) [Acinetobacter baumannii strain DB006]
ATGGATGAGAATAAAAGCAAAGCATTACAAGCCGCTTTGAGCCAAATTGAGAAGCAATTTGGTAAAAATACGGTTATGCG
TCTTGGTGATAACACTGTTCAAGCAGTTGAAGCCGTATCTACAGGTTCTTTAACTTTAGACATCGCATTGGGGATTGGTG
GTTTACCAAAAGGCCGTATTATCGAAATTTATGGTCCTGAATCTTCTGGTAAAACTACAATGACATTGCAAGCAATTGCT
CAATGTCAAAAATCTGGTGGTACATGTGCCTTCATTGATGCTGAGCACGCCCTAGACCCTCAATATGCACGCAAACTTGG
TGTAGATATTGATAACCTACTTGTTTCACAACCCGACAACGGTGAGCAAGCACTTGAAATTGCTGACATGCTTGTCCGTT
CAGGCGCAATTGATTTAATCGTTGTGGACTCGGTAGCTGCACTTACCCCTAAAGCAGAAATCGAAGGTGAGATGGGTGAC
TCTCATATGGGTCTACAAGCACGTCTTATGAGCCAGGCACTTCGTAAAATTACGGGTAATGCTAAACGTTCAAACTGTAT
GGTTATCTTCATTAACCAGATTCGTATGAAAATTGGTGTTATGTTTGGTAGCCCAGAAACTACCACTGGTGGTAATGCTC
TTAAATTCTACGCTTCAGTTCGTTTAGATATTCGTCGTATCGGTCAAGTAAAAGAAGGCGATGAAATTGTTGGTTCAGAA
ACTAAAGTTAAAGTCGTTAAGAACAAAATGGCTCCTCCGTTTAAAGAAGCTATTTTCCAAATTCTATACGGTAAAGGTAC
TAACCAACTAGGTGAACTTGTAGATTTAGCTGTACAACAGGATATCGTACAAAAAGCTGGTGCATGGTATTCATATCAAG
GCAATAAAATTGGCCAAGGTAAAAACAATGTAATTCGCTATTTTGAAGAAAATACTCAAATAGCTGAAGAAATTGAACGT
AATATCCGTGAACAATTGCTGACTACAGGCACAAATGGTGCAGTTCAAATTGAAGATGAAGAAGAGCCAGATCTTTTATT
AGAATCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9L2B2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

99.713

100

0.997
  recA Acinetobacter baylyi ADP1

93.084

99.427

0.926
  recA Pseudomonas stutzeri DSM 10701

75.602

95.129

0.719
  recA Vibrio cholerae strain A1552

73.7

93.696

0.691
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.7

93.696

0.691
  recA Ralstonia pseudosolanacearum GMI1000

70.517

94.269

0.665
  recA Glaesserella parasuis strain SC1401

71.605

92.837

0.665
  recA Neisseria gonorrhoeae MS11

65.517

99.713

0.653
  recA Neisseria gonorrhoeae MS11

65.517

99.713

0.653
  recA Neisseria gonorrhoeae strain FA1090

65.517

99.713

0.653
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.808

98.281

0.607
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.746

94.842

0.605
  recA Helicobacter pylori strain NCTC11637

64.22

93.696

0.602
  recA Helicobacter pylori 26695

63.914

93.696

0.599
  recA Streptococcus pyogenes NZ131

58.924

100

0.596
  recA Streptococcus mitis SK321

60.411

97.708

0.59
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.883

93.41

0.587
  recA Streptococcus pneumoniae D39

61.963

93.41

0.579
  recA Streptococcus mitis NCTC 12261

61.963

93.41

0.579
  recA Streptococcus pneumoniae Rx1

61.963

93.41

0.579
  recA Streptococcus pneumoniae R6

61.963

93.41

0.579
  recA Streptococcus pneumoniae TIGR4

61.963

93.41

0.579
  recA Streptococcus mutans UA159

61.585

93.983

0.579
  recA Bacillus subtilis subsp. subtilis str. 168

62.422

92.264

0.576
  recA Lactococcus lactis subsp. cremoris KW2

58.824

92.55

0.544
  recA Latilactobacillus sakei subsp. sakei 23K

58.567

91.977

0.539