Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | LOY67_RS05855 | Genome accession | NZ_CP087203 |
| Coordinates | 1328108..1329160 (+) | Length | 350 a.a. |
| NCBI ID | WP_042730773.1 | Uniprot ID | A0A5C4P7P9 |
| Organism | Pseudomonas sp. B21-056 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1285290..1329636 | 1328108..1329160 | within | 0 |
Gene organization within MGE regions
Location: 1285290..1329636
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOY67_RS05600 (LOY67_05595) | - | 1285290..1286186 (-) | 897 | WP_265066302.1 | LysR substrate-binding domain-containing protein | - |
| LOY67_RS05605 (LOY67_05600) | - | 1286294..1287406 (+) | 1113 | WP_053182417.1 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | - |
| LOY67_RS05610 (LOY67_05605) | fghA | 1287482..1288327 (+) | 846 | WP_265066303.1 | S-formylglutathione hydrolase | - |
| LOY67_RS05615 (LOY67_05610) | ispF | 1288371..1288844 (+) | 474 | WP_265066304.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| LOY67_RS05620 (LOY67_05615) | truD | 1288841..1289899 (+) | 1059 | WP_265066305.1 | tRNA pseudouridine(13) synthase TruD | - |
| LOY67_RS05625 (LOY67_05620) | surE | 1289887..1290636 (+) | 750 | WP_265066306.1 | 5'/3'-nucleotidase SurE | - |
| LOY67_RS05630 (LOY67_05625) | - | 1290675..1291310 (+) | 636 | WP_175361775.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| LOY67_RS05635 (LOY67_05630) | - | 1291522..1292367 (+) | 846 | WP_265066307.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| LOY67_RS05640 (LOY67_05635) | rpoS | 1292474..1293481 (+) | 1008 | WP_041022899.1 | RNA polymerase sigma factor RpoS | - |
| LOY67_RS05645 (LOY67_05640) | fdxA | 1293959..1294282 (-) | 324 | WP_024779043.1 | ferredoxin FdxA | - |
| LOY67_RS05650 (LOY67_05645) | mutS | 1294416..1296983 (-) | 2568 | WP_265067704.1 | DNA mismatch repair protein MutS | - |
| LOY67_RS05655 (LOY67_05650) | - | 1297249..1297416 (-) | 168 | WP_175361608.1 | hypothetical protein | - |
| LOY67_RS05660 (LOY67_05655) | - | 1297413..1298138 (-) | 726 | WP_413776199.1 | zeta toxin family protein | - |
| LOY67_RS05665 (LOY67_05660) | - | 1298457..1298810 (-) | 354 | WP_265066309.1 | DUF6124 family protein | - |
| LOY67_RS05670 (LOY67_05665) | - | 1299459..1300193 (+) | 735 | WP_265067705.1 | helix-turn-helix transcriptional regulator | - |
| LOY67_RS05675 (LOY67_05670) | - | 1300660..1300842 (+) | 183 | WP_413776162.1 | Com family DNA-binding transcriptional regulator | - |
| LOY67_RS05680 (LOY67_05675) | - | 1300864..1301508 (+) | 645 | WP_265066310.1 | hypothetical protein | - |
| LOY67_RS05685 (LOY67_05680) | - | 1301560..1302141 (+) | 582 | WP_265066311.1 | DUF642 domain-containing protein | - |
| LOY67_RS05690 (LOY67_05685) | - | 1302230..1302580 (+) | 351 | WP_265066312.1 | phage holin family protein | - |
| LOY67_RS05695 (LOY67_05690) | - | 1302617..1303129 (+) | 513 | WP_265066313.1 | hypothetical protein | - |
| LOY67_RS05700 (LOY67_05695) | - | 1303133..1303744 (+) | 612 | WP_265066314.1 | phage baseplate assembly protein V | - |
| LOY67_RS05705 (LOY67_05700) | - | 1303768..1304100 (+) | 333 | WP_265066315.1 | phage baseplate protein | - |
| LOY67_RS05710 (LOY67_05705) | - | 1304097..1305092 (+) | 996 | WP_265066316.1 | baseplate J/gp47 family protein | - |
| LOY67_RS05715 (LOY67_05710) | - | 1305089..1305724 (+) | 636 | WP_265066317.1 | phage tail protein I | - |
| LOY67_RS05720 (LOY67_05715) | - | 1305725..1307626 (+) | 1902 | WP_265066318.1 | phage tail protein | - |
| LOY67_RS05725 (LOY67_05720) | - | 1307629..1308051 (+) | 423 | WP_265066319.1 | phage tail assembly chaperone | - |
| LOY67_RS05730 (LOY67_05725) | - | 1308139..1308348 (+) | 210 | WP_265066320.1 | hypothetical protein | - |
| LOY67_RS05735 (LOY67_05730) | - | 1308351..1309517 (+) | 1167 | WP_265066321.1 | phage tail protein | - |
| LOY67_RS05740 (LOY67_05735) | - | 1309517..1310023 (+) | 507 | WP_265066322.1 | phage major tail tube protein | - |
| LOY67_RS05745 (LOY67_05740) | - | 1310165..1310740 (+) | 576 | WP_265066323.1 | phage tail assembly protein | - |
| LOY67_RS05750 (LOY67_05745) | - | 1310869..1312983 (+) | 2115 | WP_265066324.1 | phage tail tape measure protein | - |
| LOY67_RS05755 (LOY67_05750) | - | 1312983..1313366 (+) | 384 | WP_265066325.1 | phage tail protein | - |
| LOY67_RS05760 (LOY67_05755) | - | 1313359..1313571 (+) | 213 | WP_047701972.1 | tail protein X | - |
| LOY67_RS05765 (LOY67_05760) | - | 1313581..1314597 (+) | 1017 | WP_265066326.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| LOY67_RS05770 (LOY67_05765) | - | 1314964..1315548 (+) | 585 | WP_265066327.1 | hypothetical protein | - |
| LOY67_RS05775 (LOY67_05770) | - | 1315545..1315727 (+) | 183 | WP_265066328.1 | DUF2635 domain-containing protein | - |
| LOY67_RS05780 (LOY67_05775) | - | 1315727..1317223 (+) | 1497 | WP_265066329.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| LOY67_RS05785 (LOY67_05780) | - | 1317290..1317637 (+) | 348 | WP_003198314.1 | phage tail tube protein | - |
| LOY67_RS05790 (LOY67_05785) | - | 1317634..1317930 (+) | 297 | WP_265066330.1 | phage tail assembly protein | - |
| LOY67_RS05795 (LOY67_05790) | - | 1318061..1319596 (+) | 1536 | WP_265066331.1 | phage tail protein | - |
| LOY67_RS05800 (LOY67_05795) | - | 1319583..1320821 (+) | 1239 | WP_265066332.1 | DNA circularization protein | - |
| LOY67_RS05805 (LOY67_05800) | - | 1320825..1321865 (+) | 1041 | WP_265066333.1 | phage baseplate assembly protein | - |
| LOY67_RS05810 (LOY67_05805) | - | 1322109..1322618 (+) | 510 | WP_265066334.1 | phage baseplate assembly protein V | - |
| LOY67_RS05815 (LOY67_05810) | - | 1322618..1323016 (+) | 399 | WP_265066335.1 | phage GP46 family protein | - |
| LOY67_RS05820 (LOY67_05815) | - | 1323006..1324046 (+) | 1041 | WP_265066336.1 | baseplate J/gp47 family protein | - |
| LOY67_RS05825 (LOY67_05820) | - | 1324034..1324633 (+) | 600 | WP_265066337.1 | YmfQ family protein | - |
| LOY67_RS05830 (LOY67_05825) | - | 1324645..1325856 (+) | 1212 | WP_265066338.1 | carbohydrate-binding protein CenC | - |
| LOY67_RS05835 (LOY67_05830) | - | 1325865..1326251 (+) | 387 | WP_265066339.1 | phage tail assembly chaperone | - |
| LOY67_RS05840 (LOY67_05835) | - | 1326371..1326934 (+) | 564 | WP_265066340.1 | glycoside hydrolase family 19 protein | - |
| LOY67_RS05845 (LOY67_05840) | - | 1326916..1327452 (+) | 537 | WP_265066341.1 | lysis protein | - |
| LOY67_RS05850 (LOY67_05845) | - | 1327524..1328024 (+) | 501 | WP_265066342.1 | CinA family protein | - |
| LOY67_RS05855 (LOY67_05850) | recA | 1328108..1329160 (+) | 1053 | WP_042730773.1 | recombinase RecA | Machinery gene |
| LOY67_RS05860 (LOY67_05855) | recX | 1329169..1329636 (+) | 468 | WP_265066343.1 | recombination regulator RecX | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37189.66 Da Isoelectric Point: 5.5226
>NTDB_id=628058 LOY67_RS05855 WP_042730773.1 1328108..1329160(+) (recA) [Pseudomonas sp. B21-056]
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGTKIGQGKANSAKFLADNPEVAAALEK
QLRDKLLSPVADVKAVASRETADDLADADI
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGTKIGQGKANSAKFLADNPEVAAALEK
QLRDKLLSPVADVKAVASRETADDLADADI
Nucleotide
Download Length: 1053 bp
>NTDB_id=628058 LOY67_RS05855 WP_042730773.1 1328108..1329160(+) (recA) [Pseudomonas sp. B21-056]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCTTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCTATTCCTTCCATCTCTACCGGCTCCCTGGGCCTGGACATTGCGCTCGGCATCGGCG
GCCTGCCAAAAGGTCGTATCGTCGAGATCTACGGTCCTGAATCCTCCGGTAAAACCACACTGACCCTGTCCGTGATCGCC
CAGGCCCAAAAAGCCGGCGCGACCTGCGCCTTCGTCGATGCCGAACACGCCCTGGACCCGGAATACGCCGGCAAGCTGGG
CGTCAACGTCGACGATCTGCTGGTGTCCCAGCCGGACACCGGCGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCGGCATTGGTACCCAAGGCTGAAATCGAAGGTGAAATGGGCGAC
ATGCACGTGGGCCTCCAGGCTCGCCTGATGTCCCAGGCCCTGCGCAAGATCACCGGCAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTTCGCCTGGACATCCGTCGTACCGGCGCGGTGAAGGAAGGCGACGAGGTGGTCGGCAGCGAA
ACCCGCGTCAAGGTCGTGAAGAACAAGGTCGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTATGGCAAGGGCAT
CTACCTCAATGGCGAGATGATCGACCTGGGTGTGTTGCACGGTTTCGTCGAAAAATCCGGCGCCTGGTATGCCTACAACG
GTACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCAGACAACCCGGAAGTTGCGGCAGCGCTCGAGAAG
CAACTGCGTGACAAGTTGCTGAGCCCGGTTGCCGACGTCAAGGCAGTGGCCAGTCGCGAAACCGCCGACGACCTGGCTGA
CGCTGATATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCTTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCTATTCCTTCCATCTCTACCGGCTCCCTGGGCCTGGACATTGCGCTCGGCATCGGCG
GCCTGCCAAAAGGTCGTATCGTCGAGATCTACGGTCCTGAATCCTCCGGTAAAACCACACTGACCCTGTCCGTGATCGCC
CAGGCCCAAAAAGCCGGCGCGACCTGCGCCTTCGTCGATGCCGAACACGCCCTGGACCCGGAATACGCCGGCAAGCTGGG
CGTCAACGTCGACGATCTGCTGGTGTCCCAGCCGGACACCGGCGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCGGCATTGGTACCCAAGGCTGAAATCGAAGGTGAAATGGGCGAC
ATGCACGTGGGCCTCCAGGCTCGCCTGATGTCCCAGGCCCTGCGCAAGATCACCGGCAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTTCGCCTGGACATCCGTCGTACCGGCGCGGTGAAGGAAGGCGACGAGGTGGTCGGCAGCGAA
ACCCGCGTCAAGGTCGTGAAGAACAAGGTCGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTATGGCAAGGGCAT
CTACCTCAATGGCGAGATGATCGACCTGGGTGTGTTGCACGGTTTCGTCGAAAAATCCGGCGCCTGGTATGCCTACAACG
GTACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCAGACAACCCGGAAGTTGCGGCAGCGCTCGAGAAG
CAACTGCGTGACAAGTTGCTGAGCCCGGTTGCCGACGTCAAGGCAGTGGCCAGTCGCGAAACCGCCGACGACCTGGCTGA
CGCTGATATCTGA
Similar proteins
Only experimentally validated proteins are listed.