Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | LOY34_RS06170 | Genome accession | NZ_CP087199 |
| Coordinates | 1356517..1357584 (+) | Length | 355 a.a. |
| NCBI ID | WP_045193568.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. B21-009 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1329355..1357584 | 1356517..1357584 | within | 0 |
Gene organization within MGE regions
Location: 1329355..1357584
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOY34_RS06015 (LOY34_06010) | - | 1329355..1330254 (+) | 900 | WP_045193602.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| LOY34_RS06020 (LOY34_06015) | rpoS | 1330361..1331368 (+) | 1008 | WP_045193601.1 | RNA polymerase sigma factor RpoS | - |
| LOY34_RS06025 (LOY34_06020) | fdxA | 1331902..1332225 (-) | 324 | WP_010224804.1 | ferredoxin FdxA | - |
| LOY34_RS06030 (LOY34_06025) | mutS | 1332366..1334933 (-) | 2568 | WP_195885959.1 | DNA mismatch repair protein MutS | - |
| LOY34_RS06035 (LOY34_06030) | - | 1335202..1336626 (+) | 1425 | WP_195885833.1 | hypothetical protein | - |
| LOY34_RS06040 (LOY34_06035) | - | 1336720..1337463 (+) | 744 | WP_195885834.1 | XRE family transcriptional regulator | - |
| LOY34_RS06045 (LOY34_06040) | - | 1337931..1338278 (+) | 348 | WP_123565786.1 | phage holin family protein | - |
| LOY34_RS06050 (LOY34_06045) | - | 1338301..1338489 (+) | 189 | WP_195885960.1 | Com family DNA-binding transcriptional regulator | - |
| LOY34_RS06055 (LOY34_06050) | - | 1338501..1338833 (+) | 333 | WP_195885835.1 | hypothetical protein | - |
| LOY34_RS06060 (LOY34_06055) | - | 1338924..1339442 (+) | 519 | WP_195885836.1 | hypothetical protein | - |
| LOY34_RS06065 (LOY34_06060) | - | 1339439..1339999 (+) | 561 | WP_093386615.1 | phage baseplate assembly protein V | - |
| LOY34_RS06070 (LOY34_06065) | - | 1340047..1340373 (+) | 327 | WP_045193593.1 | GPW/gp25 family protein | - |
| LOY34_RS06075 (LOY34_06070) | - | 1340370..1341350 (+) | 981 | WP_195885837.1 | baseplate J/gp47 family protein | - |
| LOY34_RS06080 (LOY34_06075) | - | 1341347..1341979 (+) | 633 | WP_195885838.1 | phage tail protein I | - |
| LOY34_RS06085 (LOY34_06080) | - | 1341976..1342662 (+) | 687 | WP_195885839.1 | phage tail protein | - |
| LOY34_RS06090 (LOY34_06085) | - | 1342668..1343405 (+) | 738 | WP_195885840.1 | hypothetical protein | - |
| LOY34_RS06095 (LOY34_06090) | - | 1343415..1343876 (+) | 462 | WP_195885841.1 | hypothetical protein | - |
| LOY34_RS06100 (LOY34_06095) | - | 1343949..1344830 (+) | 882 | WP_195885842.1 | baseplate J/gp47 family protein | - |
| LOY34_RS06105 (LOY34_06100) | - | 1344832..1345437 (+) | 606 | WP_195885843.1 | phage tail protein I | - |
| LOY34_RS06110 (LOY34_06105) | - | 1345434..1347377 (+) | 1944 | WP_230090927.1 | phage tail protein | - |
| LOY34_RS06115 (LOY34_06110) | - | 1347397..1347846 (+) | 450 | WP_195885844.1 | phage tail assembly chaperone | - |
| LOY34_RS06120 (LOY34_06115) | - | 1347937..1349103 (+) | 1167 | WP_195885845.1 | phage tail sheath family protein | - |
| LOY34_RS06125 (LOY34_06120) | - | 1349116..1349625 (+) | 510 | WP_045193582.1 | phage major tail tube protein | - |
| LOY34_RS06130 (LOY34_06125) | - | 1349635..1349937 (+) | 303 | WP_045193580.1 | phage tail assembly protein | - |
| LOY34_RS06135 (LOY34_06130) | - | 1350078..1352648 (+) | 2571 | WP_195885846.1 | phage tail tape measure protein | - |
| LOY34_RS06140 (LOY34_06135) | - | 1352658..1353503 (+) | 846 | WP_045193576.1 | phage tail protein | - |
| LOY34_RS06145 (LOY34_06140) | - | 1353478..1353684 (+) | 207 | WP_093386571.1 | tail protein X | - |
| LOY34_RS06150 (LOY34_06145) | - | 1353753..1354805 (+) | 1053 | WP_195885847.1 | phage late control D family protein | - |
| LOY34_RS06155 (LOY34_06150) | - | 1354829..1355374 (+) | 546 | WP_045193573.1 | glycoside hydrolase family 19 protein | - |
| LOY34_RS06160 (LOY34_06155) | - | 1355371..1355871 (+) | 501 | WP_093386562.1 | lysis system i-spanin subunit Rz | - |
| LOY34_RS06165 (LOY34_06160) | - | 1355931..1356413 (+) | 483 | WP_195885848.1 | CinA family protein | - |
| LOY34_RS06170 (LOY34_06165) | recA | 1356517..1357584 (+) | 1068 | WP_045193568.1 | recombinase RecA | Machinery gene |
Sequence
Protein
Download Length: 355 a.a. Molecular weight: 37752.19 Da Isoelectric Point: 5.5277
>NTDB_id=627954 LOY34_RS06170 WP_045193568.1 1356517..1357584(+) (recA) [Pseudomonas sp. B21-009]
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVLHGFLEKSGAWYSYQGSKIGQGKANSAKFLQENPEIAATLEK
QIRDKLLNAGAVEAAGKAAAVAAEPEDETEAEAGY
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVLHGFLEKSGAWYSYQGSKIGQGKANSAKFLQENPEIAATLEK
QIRDKLLNAGAVEAAGKAAAVAAEPEDETEAEAGY
Nucleotide
Download Length: 1068 bp
>NTDB_id=627954 LOY34_RS06170 WP_045193568.1 1356517..1357584(+) (recA) [Pseudomonas sp. B21-009]
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGGCAAATCGAGCGTCAATTCGGTAAAGGCGCGGTCATGCG
CATGGGCGACCACGAGCGCCAGGCGATTCCGGCCATTTCCACCGGCTCCCTGGGCCTGGACATTGCCCTGGGCATTGGCG
GTCTGCCAAAAGGTCGTATCGTCGAAATCTACGGCCCTGAGTCGTCGGGTAAAACCACCCTGACCCTGTCGGTCATCGCC
CAGGCGCAGAAAGCCGGCGCTACCTGTGCCTTCGTCGACGCCGAGCACGCCCTGGACCCGGAATACGCCGGCAAGCTGGG
CGTCAATGTCGACGACCTGCTGGTCTCGCAGCCGGATACCGGTGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCGTTGACGTGATCATCGTCGACTCCGTGGCGGCGCTGGTACCCAAGGCCGAGATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAGGCTCGCCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTCCGTCTCGATATCCGCCGTACCGGCGCGGTGAAGGAAGGCGACGAAGTCGTTGGTAGCGAA
ACCCGGGTCAAAATCGTCAAGAACAAGGTGGCGCCGCCATTCCGTCAGGCTGAATTCCAGATCCTCTACGGCAAGGGCAT
CTACCGCAACGGCGAGATCATCGACCTCGGCGTGCTGCACGGCTTCCTGGAAAAATCCGGTGCCTGGTACAGCTACCAGG
GCAGCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTCCAGGAGAACCCGGAAATCGCCGCGACGCTCGAGAAG
CAGATCCGCGACAAGTTGCTCAATGCCGGCGCCGTTGAAGCGGCTGGCAAGGCTGCTGCGGTAGCCGCCGAGCCTGAAGA
CGAAACCGAAGCTGAAGCCGGCTACTGA
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGGCAAATCGAGCGTCAATTCGGTAAAGGCGCGGTCATGCG
CATGGGCGACCACGAGCGCCAGGCGATTCCGGCCATTTCCACCGGCTCCCTGGGCCTGGACATTGCCCTGGGCATTGGCG
GTCTGCCAAAAGGTCGTATCGTCGAAATCTACGGCCCTGAGTCGTCGGGTAAAACCACCCTGACCCTGTCGGTCATCGCC
CAGGCGCAGAAAGCCGGCGCTACCTGTGCCTTCGTCGACGCCGAGCACGCCCTGGACCCGGAATACGCCGGCAAGCTGGG
CGTCAATGTCGACGACCTGCTGGTCTCGCAGCCGGATACCGGTGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCGTTGACGTGATCATCGTCGACTCCGTGGCGGCGCTGGTACCCAAGGCCGAGATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAGGCTCGCCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTCCGTCTCGATATCCGCCGTACCGGCGCGGTGAAGGAAGGCGACGAAGTCGTTGGTAGCGAA
ACCCGGGTCAAAATCGTCAAGAACAAGGTGGCGCCGCCATTCCGTCAGGCTGAATTCCAGATCCTCTACGGCAAGGGCAT
CTACCGCAACGGCGAGATCATCGACCTCGGCGTGCTGCACGGCTTCCTGGAAAAATCCGGTGCCTGGTACAGCTACCAGG
GCAGCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTCCAGGAGAACCCGGAAATCGCCGCGACGCTCGAGAAG
CAGATCCGCGACAAGTTGCTCAATGCCGGCGCCGTTGAAGCGGCTGGCAAGGCTGCTGCGGTAGCCGCCGAGCCTGAAGA
CGAAACCGAAGCTGAAGCCGGCTACTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.