Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | LOY37_RS06240 | Genome accession | NZ_CP087197 |
| Coordinates | 1369787..1370860 (+) | Length | 357 a.a. |
| NCBI ID | WP_123565803.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. B21-012 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1345636..1370860 | 1369787..1370860 | within | 0 |
Gene organization within MGE regions
Location: 1345636..1370860
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOY37_RS06090 (LOY37_06090) | - | 1345636..1346391 (+) | 756 | WP_258716470.1 | hypothetical protein | - |
| LOY37_RS06095 (LOY37_06095) | - | 1346388..1347059 (+) | 672 | WP_258716471.1 | hypothetical protein | - |
| LOY37_RS06100 (LOY37_06100) | - | 1347153..1347896 (+) | 744 | WP_123565785.1 | XRE family transcriptional regulator | - |
| LOY37_RS06105 (LOY37_06105) | - | 1348365..1348712 (+) | 348 | WP_045193597.1 | phage holin family protein | - |
| LOY37_RS06110 (LOY37_06110) | - | 1348774..1349358 (+) | 585 | WP_177329127.1 | 2OG-Fe(II) oxygenase | - |
| LOY37_RS06115 (LOY37_06115) | - | 1349366..1350190 (+) | 825 | WP_258716472.1 | hypothetical protein | - |
| LOY37_RS06120 (LOY37_06120) | - | 1350264..1350812 (+) | 549 | WP_213602215.1 | hypothetical protein | - |
| LOY37_RS06125 (LOY37_06125) | - | 1350933..1351451 (+) | 519 | WP_045193595.1 | hypothetical protein | - |
| LOY37_RS06130 (LOY37_06130) | - | 1351448..1352008 (+) | 561 | WP_093386615.1 | phage baseplate assembly protein V | - |
| LOY37_RS06135 (LOY37_06135) | - | 1352056..1352382 (+) | 327 | WP_093386612.1 | GPW/gp25 family protein | - |
| LOY37_RS06140 (LOY37_06140) | - | 1352379..1353359 (+) | 981 | WP_258609840.1 | baseplate J/gp47 family protein | - |
| LOY37_RS06145 (LOY37_06145) | - | 1353356..1353988 (+) | 633 | WP_258716473.1 | phage tail protein I | - |
| LOY37_RS06150 (LOY37_06150) | - | 1353985..1354671 (+) | 687 | WP_045193590.1 | phage tail protein | - |
| LOY37_RS06155 (LOY37_06155) | - | 1354677..1355414 (+) | 738 | WP_195885840.1 | hypothetical protein | - |
| LOY37_RS06160 (LOY37_06160) | - | 1355424..1355885 (+) | 462 | WP_195885841.1 | hypothetical protein | - |
| LOY37_RS06165 (LOY37_06165) | - | 1355958..1356839 (+) | 882 | WP_258716474.1 | baseplate J/gp47 family protein | - |
| LOY37_RS06170 (LOY37_06170) | - | 1356841..1357446 (+) | 606 | WP_258716475.1 | phage tail protein I | - |
| LOY37_RS06175 (LOY37_06175) | - | 1357443..1359146 (+) | 1704 | WP_258716476.1 | phage tail protein | - |
| LOY37_RS06180 (LOY37_06180) | - | 1359307..1360473 (+) | 1167 | WP_045193584.1 | phage tail sheath family protein | - |
| LOY37_RS06185 (LOY37_06185) | - | 1360486..1360995 (+) | 510 | WP_045193582.1 | phage major tail tube protein | - |
| LOY37_RS06190 (LOY37_06190) | - | 1361005..1361307 (+) | 303 | WP_045193580.1 | phage tail assembly protein | - |
| LOY37_RS06195 (LOY37_06195) | - | 1361448..1364018 (+) | 2571 | WP_258716477.1 | phage tail tape measure protein | - |
| LOY37_RS06200 (LOY37_06200) | - | 1364028..1364873 (+) | 846 | WP_045193576.1 | phage tail protein | - |
| LOY37_RS06205 (LOY37_06205) | - | 1364848..1365054 (+) | 207 | WP_093386571.1 | tail protein X | - |
| LOY37_RS06210 (LOY37_06210) | - | 1365123..1366175 (+) | 1053 | WP_045193574.1 | phage late control D family protein | - |
| LOY37_RS06215 (LOY37_06215) | - | 1366199..1366744 (+) | 546 | WP_045193573.1 | glycoside hydrolase family 19 protein | - |
| LOY37_RS06220 (LOY37_06220) | - | 1366741..1367241 (+) | 501 | WP_093386562.1 | lysis system i-spanin subunit Rz | - |
| LOY37_RS06225 (LOY37_06225) | - | 1367285..1368586 (+) | 1302 | WP_045193571.1 | colicin-like pore-forming protein | - |
| LOY37_RS06230 (LOY37_06230) | - | 1368614..1369186 (+) | 573 | WP_258716478.1 | hypothetical protein | - |
| LOY37_RS06235 (LOY37_06235) | - | 1369201..1369683 (+) | 483 | WP_045193569.1 | CinA family protein | - |
| LOY37_RS06240 (LOY37_06240) | recA | 1369787..1370860 (+) | 1074 | WP_123565803.1 | recombinase RecA | Machinery gene |
Sequence
Protein
Download Length: 357 a.a. Molecular weight: 37935.40 Da Isoelectric Point: 5.5243
>NTDB_id=627901 LOY37_RS06240 WP_123565803.1 1369787..1370860(+) (recA) [Pseudomonas sp. B21-012]
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVLHGFLEKSGAWYSYQGSKIGQGKANSAKFLQENPEIAATLEK
QIRDKLLNAGAVEAAGKAAAVAAEPEDDLANAEEAGY
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVLHGFLEKSGAWYSYQGSKIGQGKANSAKFLQENPEIAATLEK
QIRDKLLNAGAVEAAGKAAAVAAEPEDDLANAEEAGY
Nucleotide
Download Length: 1074 bp
>NTDB_id=627901 LOY37_RS06240 WP_123565803.1 1369787..1370860(+) (recA) [Pseudomonas sp. B21-012]
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGGCAAATCGAGCGTCAATTCGGTAAAGGCGCGGTCATGCG
CATGGGCGACCACGAGCGCCAGGCGATTCCGGCCATTTCCACCGGCTCCCTGGGCCTGGACATTGCCCTGGGCATTGGCG
GTCTGCCAAAAGGTCGTATCGTCGAAATCTACGGCCCTGAGTCGTCGGGTAAAACCACCCTGACCCTGTCGGTGATTGCC
CAGGCACAGAAAGCCGGCGCTACCTGTGCCTTCGTCGACGCCGAGCACGCCCTGGACCCGGAATACGCCGGCAAGCTGGG
CGTCAACGTCGACGACCTGCTGGTCTCGCAGCCGGATACCGGTGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCGTTGACGTGATCATCGTCGACTCCGTGGCGGCGCTGGTACCCAAGGCCGAGATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAGGCTCGCCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTAATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCTGTCCGCCTCGACATCCGCCGTACCGGCGCGGTGAAGGAAGGCGACGAAGTCGTTGGTAGCGAA
ACCCGGGTCAAAATCGTCAAGAACAAGGTGGCGCCGCCATTCCGTCAGGCTGAATTCCAGATCCTCTACGGCAAGGGCAT
CTACCGCAACGGCGAGATCATCGACCTCGGCGTGCTGCACGGCTTCCTGGAAAAATCCGGTGCCTGGTACAGCTACCAGG
GCAGCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTCCAGGAGAACCCGGAAATCGCCGCGACGCTCGAGAAG
CAGATCCGCGACAAGCTGCTCAATGCCGGCGCCGTTGAAGCGGCTGGCAAGGCTGCTGCGGTAGCCGCCGAGCCTGAAGA
CGATCTGGCCAACGCTGAAGAAGCCGGCTACTGA
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGGCAAATCGAGCGTCAATTCGGTAAAGGCGCGGTCATGCG
CATGGGCGACCACGAGCGCCAGGCGATTCCGGCCATTTCCACCGGCTCCCTGGGCCTGGACATTGCCCTGGGCATTGGCG
GTCTGCCAAAAGGTCGTATCGTCGAAATCTACGGCCCTGAGTCGTCGGGTAAAACCACCCTGACCCTGTCGGTGATTGCC
CAGGCACAGAAAGCCGGCGCTACCTGTGCCTTCGTCGACGCCGAGCACGCCCTGGACCCGGAATACGCCGGCAAGCTGGG
CGTCAACGTCGACGACCTGCTGGTCTCGCAGCCGGATACCGGTGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCGTTGACGTGATCATCGTCGACTCCGTGGCGGCGCTGGTACCCAAGGCCGAGATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAGGCTCGCCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTAATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCTGTCCGCCTCGACATCCGCCGTACCGGCGCGGTGAAGGAAGGCGACGAAGTCGTTGGTAGCGAA
ACCCGGGTCAAAATCGTCAAGAACAAGGTGGCGCCGCCATTCCGTCAGGCTGAATTCCAGATCCTCTACGGCAAGGGCAT
CTACCGCAACGGCGAGATCATCGACCTCGGCGTGCTGCACGGCTTCCTGGAAAAATCCGGTGCCTGGTACAGCTACCAGG
GCAGCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTCCAGGAGAACCCGGAAATCGCCGCGACGCTCGAGAAG
CAGATCCGCGACAAGCTGCTCAATGCCGGCGCCGTTGAAGCGGCTGGCAAGGCTGCTGCGGTAGCCGCCGAGCCTGAAGA
CGATCTGGCCAACGCTGAAGAAGCCGGCTACTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.