Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | LOY36_RS22420 | Genome accession | NZ_CP087193 |
| Coordinates | 5021737..5022789 (-) | Length | 350 a.a. |
| NCBI ID | WP_258671023.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. B21-019 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 5015760..5059192 | 5021737..5022789 | within | 0 |
Gene organization within MGE regions
Location: 5015760..5059192
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOY36_RS22380 (LOY36_22345) | - | 5015820..5016746 (+) | 927 | WP_018926952.1 | LysR family transcriptional regulator | - |
| LOY36_RS22385 (LOY36_22350) | - | 5016743..5017105 (-) | 363 | WP_019647847.1 | diacylglycerol kinase | - |
| LOY36_RS22390 (LOY36_22355) | erdR | 5017181..5017831 (-) | 651 | WP_019647846.1 | response regulator transcription factor ErdR | - |
| LOY36_RS22395 (LOY36_22360) | - | 5018041..5018799 (-) | 759 | WP_019647845.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| LOY36_RS22400 (LOY36_22365) | - | 5018989..5019414 (+) | 426 | WP_018926956.1 | PA3611 family quorum-sensing-regulated virulence factor | - |
| LOY36_RS22405 (LOY36_22370) | - | 5019415..5019609 (-) | 195 | WP_018926957.1 | hypothetical protein | - |
| LOY36_RS22410 (LOY36_22375) | - | 5020100..5021218 (+) | 1119 | WP_019647844.1 | TIGR00730 family Rossman fold protein | - |
| LOY36_RS22415 (LOY36_22380) | recX | 5021261..5021728 (-) | 468 | WP_026286484.1 | recombination regulator RecX | - |
| LOY36_RS22420 (LOY36_22385) | recA | 5021737..5022789 (-) | 1053 | WP_258671023.1 | recombinase RecA | Machinery gene |
| LOY36_RS22425 (LOY36_22390) | - | 5022873..5023373 (-) | 501 | WP_019647843.1 | CinA family protein | - |
| LOY36_RS22430 (LOY36_22395) | - | 5023701..5024879 (-) | 1179 | WP_258671024.1 | acyltransferase | - |
| LOY36_RS22435 (LOY36_22400) | - | 5025021..5025563 (-) | 543 | WP_258671025.1 | lysis protein | - |
| LOY36_RS22440 (LOY36_22405) | - | 5025545..5026168 (-) | 624 | WP_258671026.1 | glycoside hydrolase family 19 protein | - |
| LOY36_RS22445 (LOY36_22410) | - | 5026227..5026754 (-) | 528 | WP_258671027.1 | tail fiber assembly protein | - |
| LOY36_RS22450 (LOY36_22415) | - | 5026763..5028115 (-) | 1353 | WP_258671028.1 | phage tail protein | - |
| LOY36_RS22455 (LOY36_22420) | - | 5028127..5028726 (-) | 600 | WP_258671029.1 | YmfQ family protein | - |
| LOY36_RS22460 (LOY36_22425) | - | 5028714..5029757 (-) | 1044 | WP_258671030.1 | baseplate J/gp47 family protein | - |
| LOY36_RS22465 (LOY36_22430) | - | 5029747..5030145 (-) | 399 | WP_003222234.1 | phage GP46 family protein | - |
| LOY36_RS22470 (LOY36_22435) | - | 5030145..5030654 (-) | 510 | WP_019647835.1 | phage baseplate assembly protein V | - |
| LOY36_RS22475 (LOY36_22440) | - | 5030707..5031750 (-) | 1044 | WP_258671031.1 | phage baseplate assembly protein | - |
| LOY36_RS22480 (LOY36_22445) | - | 5031754..5032989 (-) | 1236 | WP_258671032.1 | DNA circularization protein | - |
| LOY36_RS22485 (LOY36_22450) | - | 5032976..5034478 (-) | 1503 | WP_258671033.1 | phage tail protein | - |
| LOY36_RS22490 (LOY36_22455) | - | 5034609..5034905 (-) | 297 | WP_018926972.1 | phage tail assembly protein | - |
| LOY36_RS22495 (LOY36_22460) | - | 5034902..5035249 (-) | 348 | WP_018926973.1 | phage tail tube protein | - |
| LOY36_RS22500 (LOY36_22465) | - | 5035317..5036813 (-) | 1497 | WP_258671034.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| LOY36_RS22505 (LOY36_22470) | - | 5036813..5036995 (-) | 183 | WP_007907211.1 | DUF2635 domain-containing protein | - |
| LOY36_RS22510 (LOY36_22475) | - | 5036992..5037576 (-) | 585 | WP_258671035.1 | hypothetical protein | - |
| LOY36_RS22515 (LOY36_22480) | - | 5037797..5038813 (-) | 1017 | WP_258671036.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| LOY36_RS22520 (LOY36_22485) | - | 5038823..5039035 (-) | 213 | WP_018926977.1 | tail protein X | - |
| LOY36_RS22525 (LOY36_22490) | - | 5039028..5039411 (-) | 384 | WP_019647827.1 | phage tail protein | - |
| LOY36_RS22530 (LOY36_22495) | - | 5039411..5041570 (-) | 2160 | WP_258671037.1 | phage tail tape measure protein | - |
| LOY36_RS22535 (LOY36_22500) | - | 5041699..5042280 (-) | 582 | WP_258671038.1 | phage tail assembly protein | - |
| LOY36_RS22540 (LOY36_22505) | - | 5042398..5042904 (-) | 507 | WP_018926982.1 | phage major tail tube protein | - |
| LOY36_RS22545 (LOY36_22510) | - | 5042904..5044070 (-) | 1167 | WP_258671039.1 | phage tail protein | - |
| LOY36_RS22550 (LOY36_22515) | - | 5044073..5044282 (-) | 210 | WP_258671040.1 | hypothetical protein | - |
| LOY36_RS22555 (LOY36_22520) | - | 5044383..5045078 (-) | 696 | WP_258671041.1 | tail fiber assembly protein | - |
| LOY36_RS22560 (LOY36_22525) | - | 5045324..5046568 (-) | 1245 | Protein_4452 | phage tail protein | - |
| LOY36_RS22565 (LOY36_22530) | - | 5046569..5047204 (-) | 636 | WP_019647821.1 | phage tail protein I | - |
| LOY36_RS22570 (LOY36_22535) | - | 5047201..5048196 (-) | 996 | WP_258671042.1 | baseplate J/gp47 family protein | - |
| LOY36_RS22575 (LOY36_22540) | - | 5048193..5048525 (-) | 333 | WP_258671043.1 | phage baseplate protein | - |
| LOY36_RS22580 (LOY36_22545) | - | 5048536..5049147 (-) | 612 | WP_258671044.1 | phage baseplate assembly protein V | - |
| LOY36_RS22585 (LOY36_22550) | - | 5049151..5049663 (-) | 513 | WP_258671045.1 | hypothetical protein | - |
| LOY36_RS22590 (LOY36_22555) | - | 5049711..5050061 (-) | 351 | WP_018926992.1 | phage holin family protein | - |
| LOY36_RS22595 (LOY36_22560) | - | 5050179..5050598 (-) | 420 | WP_018926993.1 | tail fiber assembly protein | - |
| LOY36_RS22600 (LOY36_22565) | - | 5051116..5051850 (-) | 735 | WP_026331839.1 | XRE family transcriptional regulator | - |
| LOY36_RS22605 (LOY36_22570) | mutS | 5052050..5054629 (+) | 2580 | WP_026345675.1 | DNA mismatch repair protein MutS | - |
| LOY36_RS22610 (LOY36_22575) | fdxA | 5054772..5055095 (+) | 324 | WP_007940535.1 | ferredoxin FdxA | - |
| LOY36_RS22615 (LOY36_22580) | rpoS | 5055582..5056589 (-) | 1008 | WP_007940534.1 | RNA polymerase sigma factor RpoS | - |
| LOY36_RS22620 (LOY36_22585) | - | 5056697..5057554 (-) | 858 | WP_026345674.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| LOY36_RS22625 (LOY36_22590) | - | 5057766..5058401 (-) | 636 | WP_173861137.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| LOY36_RS22630 (LOY36_22595) | surE | 5058443..5059192 (-) | 750 | WP_258671046.1 | 5'/3'-nucleotidase SurE | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37243.71 Da Isoelectric Point: 5.2997
>NTDB_id=627789 LOY36_RS22420 WP_258671023.1 5021737..5022789(-) (recA) [Pseudomonas sp. B21-019]
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGTKIGQGKANSAKFLADNPEVAAALEK
QLRDKLLTPAPDVKASAVRETEDDLADADI
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGTKIGQGKANSAKFLADNPEVAAALEK
QLRDKLLTPAPDVKASAVRETEDDLADADI
Nucleotide
Download Length: 1053 bp
>NTDB_id=627789 LOY36_RS22420 WP_258671023.1 5021737..5022789(-) (recA) [Pseudomonas sp. B21-019]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCCATTTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCCTCCGGTAAAACCACCCTGACATTGTCGGTGATCGCC
CAGGCTCAAAAAGCCGGCGCGACCTGCGCATTCGTCGACGCCGAACACGCTCTCGACCCTGAGTACGCCGGCAAACTGGG
CGTCAACGTCGACGACCTGCTGGTTTCCCAGCCGGACACCGGCGAGCAGGCCCTGGAAATCACCGATATGCTGGTGCGTT
CCAACGCCGTTGACGTGATCATCGTCGACTCCGTGGCCGCTCTGGTGCCAAAGGCTGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAAATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCATCGGTTCGTCTGGACATCCGTCGTACTGGCGCGGTGAAAGAAGGTGATGAAGTCGTCGGTAGTGAA
ACCCGCGTCAAAGTCGTGAAGAACAAGGTGGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAACGGTGAGATGATCGACCTGGGTGTGCTGCACGGTTTCGTCGAGAAGTCCGGTGCCTGGTATGCCTATAACG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCAGACAACCCGGAAGTCGCCGCGGCCCTCGAGAAA
CAGCTGCGCGACAAACTGCTGACCCCAGCACCGGACGTCAAGGCTTCGGCCGTCAGAGAGACCGAAGACGACCTGGCTGA
CGCTGATATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCCATTTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCCTCCGGTAAAACCACCCTGACATTGTCGGTGATCGCC
CAGGCTCAAAAAGCCGGCGCGACCTGCGCATTCGTCGACGCCGAACACGCTCTCGACCCTGAGTACGCCGGCAAACTGGG
CGTCAACGTCGACGACCTGCTGGTTTCCCAGCCGGACACCGGCGAGCAGGCCCTGGAAATCACCGATATGCTGGTGCGTT
CCAACGCCGTTGACGTGATCATCGTCGACTCCGTGGCCGCTCTGGTGCCAAAGGCTGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAAATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCATCGGTTCGTCTGGACATCCGTCGTACTGGCGCGGTGAAAGAAGGTGATGAAGTCGTCGGTAGTGAA
ACCCGCGTCAAAGTCGTGAAGAACAAGGTGGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAACGGTGAGATGATCGACCTGGGTGTGCTGCACGGTTTCGTCGAGAAGTCCGGTGCCTGGTATGCCTATAACG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCAGACAACCCGGAAGTCGCCGCGGCCCTCGAGAAA
CAGCTGCGCGACAAACTGCTGACCCCAGCACCGGACGTCAAGGCTTCGGCCGTCAGAGAGACCGAAGACGACCTGGCTGA
CGCTGATATCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.