Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | LOY31_RS06035 | Genome accession | NZ_CP087192 |
| Coordinates | 1373492..1374550 (+) | Length | 352 a.a. |
| NCBI ID | WP_003222269.1 | Uniprot ID | J2PVU0 |
| Organism | Pseudomonas sp. B21-021 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1326008..1375029 | 1373492..1374550 | within | 0 |
Gene organization within MGE regions
Location: 1326008..1375029
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOY31_RS05755 (LOY31_05755) | - | 1326008..1326904 (-) | 897 | WP_007954817.1 | LysR substrate-binding domain-containing protein | - |
| LOY31_RS05760 (LOY31_05760) | - | 1327020..1328132 (+) | 1113 | WP_007954819.1 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | - |
| LOY31_RS05765 (LOY31_05765) | fghA | 1328188..1329033 (+) | 846 | WP_258712960.1 | S-formylglutathione hydrolase | - |
| LOY31_RS05770 (LOY31_05770) | ispF | 1329077..1329550 (+) | 474 | WP_007954821.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| LOY31_RS05775 (LOY31_05775) | truD | 1329547..1330605 (+) | 1059 | WP_011332702.1 | tRNA pseudouridine(13) synthase TruD | - |
| LOY31_RS05780 (LOY31_05780) | surE | 1330593..1331342 (+) | 750 | WP_258712961.1 | 5'/3'-nucleotidase SurE | - |
| LOY31_RS05785 (LOY31_05785) | - | 1331384..1332019 (+) | 636 | WP_170844894.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| LOY31_RS05790 (LOY31_05790) | - | 1332231..1333112 (+) | 882 | WP_085605229.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| LOY31_RS05795 (LOY31_05795) | rpoS | 1333219..1334226 (+) | 1008 | WP_007954831.1 | RNA polymerase sigma factor RpoS | - |
| LOY31_RS05800 (LOY31_05800) | fdxA | 1334716..1335039 (-) | 324 | WP_007908827.1 | ferredoxin FdxA | - |
| LOY31_RS05805 (LOY31_05805) | mutS | 1335203..1337785 (-) | 2583 | WP_258712962.1 | DNA mismatch repair protein MutS | - |
| LOY31_RS05810 (LOY31_05810) | - | 1337996..1338730 (+) | 735 | WP_085605233.1 | XRE family transcriptional regulator | - |
| LOY31_RS05815 (LOY31_05815) | - | 1339345..1339767 (+) | 423 | WP_085605235.1 | tail fiber assembly protein | - |
| LOY31_RS05820 (LOY31_05820) | - | 1339901..1340317 (+) | 417 | WP_221532909.1 | tail fiber assembly protein | - |
| LOY31_RS05825 (LOY31_05825) | - | 1340453..1340857 (+) | 405 | WP_221532908.1 | tail fiber assembly protein | - |
| LOY31_RS05830 (LOY31_05830) | - | 1341035..1341373 (+) | 339 | WP_064593815.1 | phage holin family protein | - |
| LOY31_RS05835 (LOY31_05835) | - | 1341446..1341967 (+) | 522 | WP_221532907.1 | hypothetical protein | - |
| LOY31_RS05840 (LOY31_05840) | - | 1341971..1342579 (+) | 609 | WP_221532906.1 | phage baseplate assembly protein V | - |
| LOY31_RS05845 (LOY31_05845) | - | 1342594..1342926 (+) | 333 | WP_221532905.1 | phage baseplate protein | - |
| LOY31_RS05850 (LOY31_05850) | - | 1342923..1343918 (+) | 996 | WP_085605253.1 | baseplate J/gp47 family protein | - |
| LOY31_RS05855 (LOY31_05855) | - | 1343915..1344550 (+) | 636 | WP_221532904.1 | phage tail protein I | - |
| LOY31_RS05860 (LOY31_05860) | - | 1344551..1346800 (+) | 2250 | WP_408980463.1 | phage tail protein | - |
| LOY31_RS29445 | - | 1346899..1347489 (+) | 591 | WP_408980472.1 | gp53-like domain-containing protein | - |
| LOY31_RS05865 (LOY31_05865) | - | 1347499..1348044 (+) | 546 | WP_221532903.1 | DUF4376 domain-containing protein | - |
| LOY31_RS05870 (LOY31_05870) | - | 1348146..1348331 (+) | 186 | WP_039771239.1 | hypothetical protein | - |
| LOY31_RS05875 (LOY31_05875) | - | 1348334..1349500 (+) | 1167 | WP_115076745.1 | phage tail protein | - |
| LOY31_RS05880 (LOY31_05880) | - | 1349500..1350006 (+) | 507 | WP_007954868.1 | phage major tail tube protein | - |
| LOY31_RS05885 (LOY31_05885) | - | 1350105..1350686 (+) | 582 | WP_221532902.1 | phage tail assembly protein | - |
| LOY31_RS05890 (LOY31_05890) | - | 1350815..1353064 (+) | 2250 | WP_221532901.1 | phage tail tape measure protein | - |
| LOY31_RS05895 (LOY31_05895) | - | 1353064..1353447 (+) | 384 | WP_258712963.1 | phage tail protein | - |
| LOY31_RS05900 (LOY31_05900) | - | 1353440..1353652 (+) | 213 | WP_085605268.1 | tail protein X | - |
| LOY31_RS05905 (LOY31_05905) | - | 1353662..1354690 (+) | 1029 | WP_258712964.1 | phage late control D family protein | - |
| LOY31_RS05910 (LOY31_05910) | - | 1354752..1355336 (+) | 585 | WP_258712965.1 | hypothetical protein | - |
| LOY31_RS05915 (LOY31_05915) | - | 1355333..1355512 (+) | 180 | WP_007954893.1 | DUF2635 domain-containing protein | - |
| LOY31_RS05920 (LOY31_05920) | - | 1355512..1357008 (+) | 1497 | WP_258712966.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| LOY31_RS05925 (LOY31_05925) | - | 1357076..1357423 (+) | 348 | WP_007908779.1 | phage tail tube protein | - |
| LOY31_RS05930 (LOY31_05930) | - | 1357420..1357716 (+) | 297 | WP_003222226.1 | phage tail assembly protein | - |
| LOY31_RS05935 (LOY31_05935) | - | 1357847..1359865 (+) | 2019 | WP_258712967.1 | phage tail protein | - |
| LOY31_RS05940 (LOY31_05940) | - | 1359852..1361087 (+) | 1236 | WP_258712968.1 | DNA circularization protein | - |
| LOY31_RS05945 (LOY31_05945) | - | 1361091..1362134 (+) | 1044 | WP_258712969.1 | phage baseplate assembly protein | - |
| LOY31_RS05950 (LOY31_05950) | - | 1362162..1362671 (+) | 510 | WP_011332728.1 | phage baseplate assembly protein V | - |
| LOY31_RS05955 (LOY31_05955) | - | 1362671..1363069 (+) | 399 | WP_007954906.1 | phage GP46 family protein | - |
| LOY31_RS05960 (LOY31_05960) | - | 1363059..1364102 (+) | 1044 | WP_258712970.1 | baseplate J/gp47 family protein | - |
| LOY31_RS05965 (LOY31_05965) | - | 1364090..1364689 (+) | 600 | WP_258712971.1 | YmfQ family protein | - |
| LOY31_RS05970 (LOY31_05970) | - | 1364701..1365321 (+) | 621 | WP_258712972.1 | hypothetical protein | - |
| LOY31_RS05975 (LOY31_05975) | - | 1365330..1365791 (+) | 462 | WP_221532895.1 | phage tail assembly chaperone | - |
| LOY31_RS05980 (LOY31_05980) | - | 1365825..1366919 (+) | 1095 | WP_221532894.1 | phage tail protein | - |
| LOY31_RS05985 (LOY31_05985) | - | 1366927..1367493 (+) | 567 | WP_221532893.1 | tail fiber assembly protein | - |
| LOY31_RS05990 (LOY31_05990) | - | 1367516..1368442 (+) | 927 | WP_221532892.1 | hypothetical protein | - |
| LOY31_RS05995 (LOY31_05995) | - | 1368442..1368909 (+) | 468 | WP_221532891.1 | phage tail assembly chaperone | - |
| LOY31_RS06000 (LOY31_06000) | - | 1368951..1369850 (+) | 900 | WP_221532890.1 | phage tail protein | - |
| LOY31_RS06005 (LOY31_06005) | - | 1369851..1370297 (+) | 447 | WP_221532889.1 | phage tail assembly chaperone | - |
| LOY31_RS29375 | - | 1370316..1371476 (+) | 1161 | WP_221532888.1 | hypothetical protein | - |
| LOY31_RS06015 (LOY31_06015) | - | 1371476..1371730 (+) | 255 | WP_221532887.1 | hypothetical protein | - |
| LOY31_RS06020 (LOY31_06020) | - | 1371764..1372327 (+) | 564 | WP_258712973.1 | glycoside hydrolase family 19 protein | - |
| LOY31_RS06025 (LOY31_06025) | - | 1372309..1372839 (+) | 531 | WP_221532885.1 | lysis system i-spanin subunit Rz | - |
| LOY31_RS06030 (LOY31_06030) | - | 1372908..1373408 (+) | 501 | WP_221532884.1 | CinA family protein | - |
| LOY31_RS06035 (LOY31_06035) | recA | 1373492..1374550 (+) | 1059 | WP_003222269.1 | recombinase RecA | Machinery gene |
| LOY31_RS06040 (LOY31_06040) | recX | 1374559..1375029 (+) | 471 | WP_085605307.1 | recombination regulator RecX | - |
Sequence
Protein
Download Length: 352 a.a. Molecular weight: 37447.98 Da Isoelectric Point: 5.3111
>NTDB_id=627753 LOY31_RS06035 WP_003222269.1 1373492..1374550(+) (recA) [Pseudomonas sp. B21-021]
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEVAAKLEK
QLRDKLLSPAVIADSKASAVKETEDDLADADI
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEVAAKLEK
QLRDKLLSPAVIADSKASAVKETEDDLADADI
Nucleotide
Download Length: 1059 bp
>NTDB_id=627753 LOY31_RS06035 WP_003222269.1 1373492..1374550(+) (recA) [Pseudomonas sp. B21-021]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCCATTTCCACCGGCTCTCTGGGTCTGGACATCGCACTCGGCATCGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACACTGACGCTGTCCGTGATCGCC
CAGGCTCAAAAAGCCGGTGCGACCTGCGCCTTCGTCGACGCCGAACACGCCCTCGACCCTGAGTACGCCGGCAAACTGGG
CGTCAACGTCGACGACCTGCTGGTTTCCCAGCCGGACACCGGCGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCGTTGACGTGATCATCGTCGACTCCGTGGCCGCTCTGGTGCCAAAGGCTGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTTCGTCTCGACATCCGCCGTACCGGCGCGGTGAAGGAAGGCGACGAAGTGGTCGGCAGCGAA
ACCCGCGTCAAGGTTGTGAAGAACAAGGTCGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTGAACGGCGAGATGATCGACCTGGGCGTACTGCACGGTTTCGTCGAGAAGTCCGGCGCCTGGTATGCCTACGAAG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGACAACCCGGAAGTCGCGGCCAAGCTCGAGAAG
CAACTGCGTGACAAACTGCTGTCGCCAGCCGTGATCGCCGACTCCAAGGCTTCTGCGGTCAAAGAGACCGAAGACGACCT
GGCTGACGCTGACATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCCATTTCCACCGGCTCTCTGGGTCTGGACATCGCACTCGGCATCGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACACTGACGCTGTCCGTGATCGCC
CAGGCTCAAAAAGCCGGTGCGACCTGCGCCTTCGTCGACGCCGAACACGCCCTCGACCCTGAGTACGCCGGCAAACTGGG
CGTCAACGTCGACGACCTGCTGGTTTCCCAGCCGGACACCGGCGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCGTTGACGTGATCATCGTCGACTCCGTGGCCGCTCTGGTGCCAAAGGCTGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTTCGTCTCGACATCCGCCGTACCGGCGCGGTGAAGGAAGGCGACGAAGTGGTCGGCAGCGAA
ACCCGCGTCAAGGTTGTGAAGAACAAGGTCGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTGAACGGCGAGATGATCGACCTGGGCGTACTGCACGGTTTCGTCGAGAAGTCCGGCGCCTGGTATGCCTACGAAG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGACAACCCGGAAGTCGCGGCCAAGCTCGAGAAG
CAACTGCGTGACAAACTGCTGTCGCCAGCCGTGATCGCCGACTCCAAGGCTTCTGCGGTCAAAGAGACCGAAGACGACCT
GGCTGACGCTGACATCTGA
Similar proteins
Only experimentally validated proteins are listed.