Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | LOY54_RS06220 | Genome accession | NZ_CP087180 |
| Coordinates | 1366967..1368034 (+) | Length | 355 a.a. |
| NCBI ID | WP_045193568.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. B21-032 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1337545..1368034 | 1366967..1368034 | within | 0 |
Gene organization within MGE regions
Location: 1337545..1368034
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOY54_RS06055 (LOY54_06055) | - | 1337545..1338441 (+) | 897 | WP_258609819.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| LOY54_RS06060 (LOY54_06060) | rpoS | 1338548..1339555 (+) | 1008 | WP_045193601.1 | RNA polymerase sigma factor RpoS | - |
| LOY54_RS06065 (LOY54_06065) | fdxA | 1340089..1340412 (-) | 324 | WP_010224804.1 | ferredoxin FdxA | - |
| LOY54_RS06070 (LOY54_06070) | mutS | 1340553..1343120 (-) | 2568 | WP_258610695.1 | DNA mismatch repair protein MutS | - |
| LOY54_RS06075 (LOY54_06075) | - | 1343391..1344815 (+) | 1425 | WP_258609821.1 | hypothetical protein | - |
| LOY54_RS06080 (LOY54_06080) | - | 1344909..1345652 (+) | 744 | WP_258609823.1 | XRE family transcriptional regulator | - |
| LOY54_RS06085 (LOY54_06085) | - | 1346121..1346468 (+) | 348 | WP_045193597.1 | phage holin family protein | - |
| LOY54_RS06090 (LOY54_06090) | - | 1346627..1347789 (+) | 1163 | WP_258606965.1 | IS3 family transposase | - |
| LOY54_RS06095 (LOY54_06095) | - | 1347973..1348353 (+) | 381 | WP_258609825.1 | 2OG-Fe(II) oxygenase | - |
| LOY54_RS06100 (LOY54_06100) | - | 1348361..1349185 (+) | 825 | WP_156160152.1 | hypothetical protein | - |
| LOY54_RS06105 (LOY54_06105) | - | 1349259..1349807 (+) | 549 | WP_258609828.1 | hypothetical protein | - |
| LOY54_RS06110 (LOY54_06110) | - | 1349928..1350446 (+) | 519 | WP_258609837.1 | hypothetical protein | - |
| LOY54_RS06115 (LOY54_06115) | - | 1350443..1351003 (+) | 561 | WP_093386615.1 | phage baseplate assembly protein V | - |
| LOY54_RS06120 (LOY54_06120) | - | 1351051..1351377 (+) | 327 | WP_093386612.1 | GPW/gp25 family protein | - |
| LOY54_RS06125 (LOY54_06125) | - | 1351374..1352354 (+) | 981 | WP_258609840.1 | baseplate J/gp47 family protein | - |
| LOY54_RS06130 (LOY54_06130) | - | 1352351..1352983 (+) | 633 | WP_045193591.1 | phage tail protein I | - |
| LOY54_RS06135 (LOY54_06135) | - | 1352980..1353666 (+) | 687 | WP_045193590.1 | phage tail protein | - |
| LOY54_RS06140 (LOY54_06140) | - | 1353672..1354409 (+) | 738 | WP_258609851.1 | DUF1565 domain-containing protein | - |
| LOY54_RS06145 (LOY54_06145) | - | 1354419..1354880 (+) | 462 | WP_258609853.1 | hypothetical protein | - |
| LOY54_RS06150 (LOY54_06150) | - | 1354954..1355835 (+) | 882 | WP_258609855.1 | baseplate J/gp47 family protein | - |
| LOY54_RS06155 (LOY54_06155) | - | 1355837..1356442 (+) | 606 | WP_258609864.1 | phage tail protein I | - |
| LOY54_RS06160 (LOY54_06160) | - | 1356439..1358382 (+) | 1944 | WP_258609866.1 | phage tail protein | - |
| LOY54_RS06165 (LOY54_06165) | - | 1358402..1358851 (+) | 450 | WP_258609869.1 | phage tail assembly chaperone | - |
| LOY54_RS06170 (LOY54_06170) | - | 1358942..1360108 (+) | 1167 | WP_213602211.1 | phage tail sheath family protein | - |
| LOY54_RS06175 (LOY54_06175) | - | 1360121..1360630 (+) | 510 | WP_045193582.1 | phage major tail tube protein | - |
| LOY54_RS06180 (LOY54_06180) | - | 1360640..1360942 (+) | 303 | WP_045193580.1 | phage tail assembly protein | - |
| LOY54_RS06185 (LOY54_06185) | - | 1361086..1363098 (+) | 2013 | WP_258609872.1 | hypothetical protein | - |
| LOY54_RS06190 (LOY54_06190) | - | 1363108..1363953 (+) | 846 | WP_258609874.1 | phage tail protein | - |
| LOY54_RS06195 (LOY54_06195) | - | 1363928..1364134 (+) | 207 | WP_093386571.1 | tail protein X | - |
| LOY54_RS06200 (LOY54_06200) | - | 1364203..1365255 (+) | 1053 | WP_258609876.1 | phage late control D family protein | - |
| LOY54_RS06205 (LOY54_06205) | - | 1365279..1365824 (+) | 546 | WP_258609878.1 | glycoside hydrolase family 19 protein | - |
| LOY54_RS06210 (LOY54_06210) | - | 1365821..1366321 (+) | 501 | WP_258609880.1 | lysis protein | - |
| LOY54_RS06215 (LOY54_06215) | - | 1366381..1366863 (+) | 483 | WP_258609888.1 | CinA family protein | - |
| LOY54_RS06220 (LOY54_06220) | recA | 1366967..1368034 (+) | 1068 | WP_045193568.1 | recombinase RecA | Machinery gene |
Sequence
Protein
Download Length: 355 a.a. Molecular weight: 37752.19 Da Isoelectric Point: 5.5277
>NTDB_id=627454 LOY54_RS06220 WP_045193568.1 1366967..1368034(+) (recA) [Pseudomonas sp. B21-032]
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVLHGFLEKSGAWYSYQGSKIGQGKANSAKFLQENPEIAATLEK
QIRDKLLNAGAVEAAGKAAAVAAEPEDETEAEAGY
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVLHGFLEKSGAWYSYQGSKIGQGKANSAKFLQENPEIAATLEK
QIRDKLLNAGAVEAAGKAAAVAAEPEDETEAEAGY
Nucleotide
Download Length: 1068 bp
>NTDB_id=627454 LOY54_RS06220 WP_045193568.1 1366967..1368034(+) (recA) [Pseudomonas sp. B21-032]
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGGCAAATCGAGCGTCAATTCGGTAAAGGCGCGGTCATGCG
CATGGGCGACCACGAGCGCCAGGCGATTCCGGCCATTTCCACCGGCTCCCTGGGCCTGGACATTGCCCTGGGCATTGGCG
GTCTGCCAAAAGGTCGTATCGTCGAAATCTACGGCCCTGAGTCGTCGGGTAAAACCACCCTGACCCTGTCGGTGATTGCC
CAGGCACAGAAAGCCGGCGCTACCTGTGCCTTCGTCGACGCCGAGCACGCCCTGGACCCGGAATACGCCGGCAAGCTGGG
CGTCAACGTCGACGACCTGCTGGTCTCGCAGCCGGATACCGGTGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCGTTGACGTGATCATCGTCGACTCCGTGGCGGCGCTGGTACCCAAGGCCGAGATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAGGCTCGCCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTAATTTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTCCGTCTCGACATCCGCCGTACCGGCGCGGTGAAGGAAGGCGACGAAGTCGTTGGTAGCGAA
ACCCGGGTCAAAATCGTCAAGAACAAGGTGGCGCCGCCATTCCGTCAGGCTGAATTCCAGATCCTCTACGGCAAGGGCAT
CTACCGCAACGGCGAGATCATAGACCTCGGCGTGCTGCACGGCTTCCTGGAAAAATCCGGTGCCTGGTATAGCTACCAGG
GCAGCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTCCAGGAGAACCCGGAAATCGCCGCGACGCTCGAGAAG
CAGATCCGCGACAAGCTGCTCAATGCCGGCGCCGTTGAAGCGGCTGGCAAGGCTGCTGCGGTAGCCGCCGAGCCTGAAGA
CGAAACCGAAGCTGAAGCCGGCTACTGA
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGGCAAATCGAGCGTCAATTCGGTAAAGGCGCGGTCATGCG
CATGGGCGACCACGAGCGCCAGGCGATTCCGGCCATTTCCACCGGCTCCCTGGGCCTGGACATTGCCCTGGGCATTGGCG
GTCTGCCAAAAGGTCGTATCGTCGAAATCTACGGCCCTGAGTCGTCGGGTAAAACCACCCTGACCCTGTCGGTGATTGCC
CAGGCACAGAAAGCCGGCGCTACCTGTGCCTTCGTCGACGCCGAGCACGCCCTGGACCCGGAATACGCCGGCAAGCTGGG
CGTCAACGTCGACGACCTGCTGGTCTCGCAGCCGGATACCGGTGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCGTTGACGTGATCATCGTCGACTCCGTGGCGGCGCTGGTACCCAAGGCCGAGATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAGGCTCGCCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTAATTTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTCCGTCTCGACATCCGCCGTACCGGCGCGGTGAAGGAAGGCGACGAAGTCGTTGGTAGCGAA
ACCCGGGTCAAAATCGTCAAGAACAAGGTGGCGCCGCCATTCCGTCAGGCTGAATTCCAGATCCTCTACGGCAAGGGCAT
CTACCGCAACGGCGAGATCATAGACCTCGGCGTGCTGCACGGCTTCCTGGAAAAATCCGGTGCCTGGTATAGCTACCAGG
GCAGCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTCCAGGAGAACCCGGAAATCGCCGCGACGCTCGAGAAG
CAGATCCGCGACAAGCTGCTCAATGCCGGCGCCGTTGAAGCGGCTGGCAAGGCTGCTGCGGTAGCCGCCGAGCCTGAAGA
CGAAACCGAAGCTGAAGCCGGCTACTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.