Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | LOY55_RS05600 | Genome accession | NZ_CP087176 |
| Coordinates | 1255659..1256711 (+) | Length | 350 a.a. |
| NCBI ID | WP_046029245.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. B21-040 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1244263..1262509 | 1255659..1256711 | within | 0 |
Gene organization within MGE regions
Location: 1244263..1262509
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOY55_RS05535 (LOY55_05535) | - | 1244263..1245120 (+) | 858 | WP_258667790.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| LOY55_RS05540 (LOY55_05540) | rpoS | 1245227..1246234 (+) | 1008 | WP_059407844.1 | RNA polymerase sigma factor RpoS | - |
| LOY55_RS05545 (LOY55_05545) | fdxA | 1246698..1247036 (-) | 339 | WP_223523872.1 | ferredoxin FdxA | - |
| LOY55_RS05550 (LOY55_05550) | mutS | 1247179..1249746 (-) | 2568 | WP_223523989.1 | DNA mismatch repair protein MutS | - |
| LOY55_RS05555 (LOY55_05555) | - | 1249959..1250693 (+) | 735 | WP_109786100.1 | XRE family transcriptional regulator | - |
| LOY55_RS05560 (LOY55_05560) | - | 1251194..1251544 (+) | 351 | WP_109788206.1 | phage holin family protein | - |
| LOY55_RS05565 (LOY55_05565) | - | 1251592..1252113 (+) | 522 | WP_223523875.1 | hypothetical protein | - |
| LOY55_RS05570 (LOY55_05570) | - | 1252117..1252728 (+) | 612 | WP_223523877.1 | phage baseplate assembly protein V | - |
| LOY55_RS30990 | - | 1252739..1252828 (+) | 90 | Protein_1095 | phage baseplate protein | - |
| LOY55_RS05575 (LOY55_05575) | - | 1252826..1253053 (+) | 228 | Protein_1096 | phage tail protein | - |
| LOY55_RS05580 (LOY55_05580) | - | 1253046..1253258 (+) | 213 | WP_109788210.1 | tail protein X | - |
| LOY55_RS05585 (LOY55_05585) | - | 1253268..1254284 (+) | 1017 | WP_223523883.1 | phage late control D family protein | - |
| LOY55_RS05590 (LOY55_05590) | - | 1254349..1254996 (+) | 648 | WP_223523886.1 | glycoside hydrolase family 19 protein | - |
| LOY55_RS05595 (LOY55_05595) | - | 1255075..1255575 (+) | 501 | WP_046029637.1 | CinA family protein | - |
| LOY55_RS05600 (LOY55_05600) | recA | 1255659..1256711 (+) | 1053 | WP_046029245.1 | recombinase RecA | Machinery gene |
| LOY55_RS05605 (LOY55_05605) | recX | 1256720..1257187 (+) | 468 | WP_109788012.1 | recombination regulator RecX | - |
| LOY55_RS05610 (LOY55_05610) | - | 1257232..1258350 (-) | 1119 | WP_046029248.1 | TIGR00730 family Rossman fold protein | - |
| LOY55_RS05615 (LOY55_05615) | - | 1258717..1258911 (+) | 195 | WP_046029250.1 | hypothetical protein | - |
| LOY55_RS05620 (LOY55_05620) | - | 1258912..1259337 (-) | 426 | WP_077430786.1 | PA3611 family quorum-sensing-regulated virulence factor | - |
| LOY55_RS05625 (LOY55_05625) | - | 1259527..1260285 (+) | 759 | WP_077430785.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| LOY55_RS05630 (LOY55_05630) | erdR | 1260498..1261148 (+) | 651 | WP_046029256.1 | response regulator transcription factor ErdR | - |
| LOY55_RS05635 (LOY55_05635) | - | 1261224..1261586 (+) | 363 | WP_046029258.1 | diacylglycerol kinase | - |
| LOY55_RS05640 (LOY55_05640) | - | 1261583..1262509 (-) | 927 | WP_046029261.1 | LysR family transcriptional regulator | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37285.83 Da Isoelectric Point: 5.5328
>NTDB_id=627350 LOY55_RS05600 WP_046029245.1 1255659..1256711(+) (recA) [Pseudomonas sp. B21-040]
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEIAAKLEK
QLRDKLLTPAPDVKASPVKETADDLADADI
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEIAAKLEK
QLRDKLLTPAPDVKASPVKETADDLADADI
Nucleotide
Download Length: 1053 bp
>NTDB_id=627350 LOY55_RS05600 WP_046029245.1 1255659..1256711(+) (recA) [Pseudomonas sp. B21-040]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCATCCATCTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGTATTGGCG
GTCTGCCAAAAGGTCGTATCGTTGAAATCTACGGTCCTGAATCCTCCGGTAAAACCACACTGACACTGTCCGTGATCGCC
CAGGCTCAAAAAGCTGGCGCGACCTGCGCATTCGTCGATGCCGAACACGCGCTCGATCCTGAGTACGCCGGCAAACTGGG
CGTCAACGTCGACGACCTGCTGGTTTCCCAGCCGGACACCGGCGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCGGCACTGGTGCCAAAGGCAGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTCGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGTAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTTCGTCTGGACATCCGTCGTACTGGCGCGGTGAAAGAAGGTGATGAAGTCGTCGGTAGCGAA
ACCCGCGTCAAGGTCGTGAAGAACAAAGTGGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATCCTTTACGGCAAAGGCAT
CTACCTCAATGGCGAGATGATCGACCTGGGTGTTCTGCACGGTTTCGTCGAGAAATCCGGTGCCTGGTATGCCTATGAAG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGACAATCCGGAAATCGCCGCGAAGCTCGAGAAG
CAGCTGCGTGACAAACTGCTGACCCCGGCGCCGGACGTCAAAGCATCGCCAGTCAAAGAGACTGCTGATGACCTGGCTGA
CGCTGATATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCATCCATCTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGTATTGGCG
GTCTGCCAAAAGGTCGTATCGTTGAAATCTACGGTCCTGAATCCTCCGGTAAAACCACACTGACACTGTCCGTGATCGCC
CAGGCTCAAAAAGCTGGCGCGACCTGCGCATTCGTCGATGCCGAACACGCGCTCGATCCTGAGTACGCCGGCAAACTGGG
CGTCAACGTCGACGACCTGCTGGTTTCCCAGCCGGACACCGGCGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCGGCACTGGTGCCAAAGGCAGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTCGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGTAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTTCGTCTGGACATCCGTCGTACTGGCGCGGTGAAAGAAGGTGATGAAGTCGTCGGTAGCGAA
ACCCGCGTCAAGGTCGTGAAGAACAAAGTGGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATCCTTTACGGCAAAGGCAT
CTACCTCAATGGCGAGATGATCGACCTGGGTGTTCTGCACGGTTTCGTCGAGAAATCCGGTGCCTGGTATGCCTATGAAG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGACAATCCGGAAATCGCCGCGAAGCTCGAGAAG
CAGCTGCGTGACAAACTGCTGACCCCGGCGCCGGACGTCAAAGCATCGCCAGTCAAAGAGACTGCTGATGACCTGGCTGA
CGCTGATATCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.