Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | LOY43_RS06045 | Genome accession | NZ_CP087175 |
| Coordinates | 1376198..1377253 (+) | Length | 351 a.a. |
| NCBI ID | WP_007908746.1 | Uniprot ID | J3FUG2 |
| Organism | Pseudomonas sp. B21-041 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1327532..1380813 | 1376198..1377253 | within | 0 |
Gene organization within MGE regions
Location: 1327532..1380813
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOY43_RS05750 (LOY43_05735) | - | 1327532..1328428 (-) | 897 | WP_095050408.1 | LysR substrate-binding domain-containing protein | - |
| LOY43_RS05755 (LOY43_05740) | - | 1328544..1329656 (+) | 1113 | WP_093436558.1 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | - |
| LOY43_RS05760 (LOY43_05745) | fghA | 1329753..1330598 (+) | 846 | WP_408980828.1 | S-formylglutathione hydrolase | - |
| LOY43_RS05765 (LOY43_05750) | ispF | 1330642..1331115 (+) | 474 | WP_053159558.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| LOY43_RS05770 (LOY43_05755) | truD | 1331112..1332170 (+) | 1059 | WP_095050410.1 | tRNA pseudouridine(13) synthase TruD | - |
| LOY43_RS05775 (LOY43_05760) | surE | 1332158..1332907 (+) | 750 | WP_007908831.1 | 5'/3'-nucleotidase SurE | - |
| LOY43_RS05780 (LOY43_05765) | - | 1332949..1333584 (+) | 636 | WP_171057346.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| LOY43_RS05785 (LOY43_05770) | - | 1333797..1334666 (+) | 870 | WP_093436549.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| LOY43_RS05790 (LOY43_05775) | rpoS | 1334773..1335783 (+) | 1011 | WP_038357938.1 | RNA polymerase sigma factor RpoS | - |
| LOY43_RS05795 (LOY43_05780) | fdxA | 1336310..1336633 (-) | 324 | WP_007908827.1 | ferredoxin FdxA | - |
| LOY43_RS05800 (LOY43_05785) | mutS | 1336797..1339367 (-) | 2571 | WP_176471349.1 | DNA mismatch repair protein MutS | - |
| LOY43_RS05805 (LOY43_05790) | - | 1339618..1340374 (+) | 757 | Protein_1145 | transcriptional regulator | - |
| LOY43_RS05810 (LOY43_05795) | - | 1340341..1340832 (+) | 492 | WP_095050412.1 | hypothetical protein | - |
| LOY43_RS05815 (LOY43_05800) | - | 1341034..1341393 (+) | 360 | WP_258709325.1 | hypothetical protein | - |
| LOY43_RS05820 (LOY43_05805) | - | 1341390..1341770 (+) | 381 | WP_220558178.1 | DUF1090 domain-containing protein | - |
| LOY43_RS05825 (LOY43_05810) | - | 1341860..1342042 (+) | 183 | WP_007908822.1 | hypothetical protein | - |
| LOY43_RS05830 (LOY43_05815) | - | 1342181..1342915 (+) | 735 | WP_007908821.1 | XRE family transcriptional regulator | - |
| LOY43_RS05835 (LOY43_05820) | - | 1343471..1343911 (+) | 441 | WP_095126491.1 | tail fiber assembly protein | - |
| LOY43_RS05840 (LOY43_05825) | - | 1344055..1344393 (+) | 339 | WP_095050416.1 | phage holin family protein | - |
| LOY43_RS05845 (LOY43_05830) | - | 1344464..1344985 (+) | 522 | WP_095050417.1 | hypothetical protein | - |
| LOY43_RS05850 (LOY43_05835) | - | 1344989..1345597 (+) | 609 | WP_258709326.1 | phage baseplate assembly protein V | - |
| LOY43_RS05855 (LOY43_05840) | - | 1345613..1345945 (+) | 333 | WP_016985063.1 | phage baseplate protein | - |
| LOY43_RS05860 (LOY43_05845) | - | 1345942..1346937 (+) | 996 | WP_258709327.1 | baseplate J/gp47 family protein | - |
| LOY43_RS05865 (LOY43_05850) | - | 1346934..1347569 (+) | 636 | WP_258709328.1 | phage tail protein I | - |
| LOY43_RS05870 (LOY43_05855) | - | 1347570..1350065 (+) | 2496 | WP_258709329.1 | phage tail protein | - |
| LOY43_RS05875 (LOY43_05860) | - | 1350075..1350620 (+) | 546 | WP_258709330.1 | DUF4376 domain-containing protein | - |
| LOY43_RS05880 (LOY43_05865) | - | 1350721..1350906 (+) | 186 | WP_099758137.1 | hypothetical protein | - |
| LOY43_RS05885 (LOY43_05870) | - | 1350909..1352075 (+) | 1167 | WP_258709331.1 | phage tail protein | - |
| LOY43_RS05890 (LOY43_05875) | - | 1352075..1352581 (+) | 507 | WP_085697357.1 | phage major tail tube protein | - |
| LOY43_RS05895 (LOY43_05880) | - | 1352753..1353334 (+) | 582 | WP_258709332.1 | phage tail assembly protein | - |
| LOY43_RS05900 (LOY43_05885) | - | 1353464..1355440 (+) | 1977 | WP_258709333.1 | phage tail tape measure protein | - |
| LOY43_RS05905 (LOY43_05890) | - | 1355440..1355823 (+) | 384 | WP_095050425.1 | phage tail protein | - |
| LOY43_RS05910 (LOY43_05895) | - | 1355816..1356028 (+) | 213 | WP_258709334.1 | tail protein X | - |
| LOY43_RS05915 (LOY43_05900) | - | 1356038..1357066 (+) | 1029 | WP_258709335.1 | phage late control D family protein | - |
| LOY43_RS05920 (LOY43_05905) | - | 1357208..1357792 (+) | 585 | WP_095050428.1 | hypothetical protein | - |
| LOY43_RS05925 (LOY43_05910) | - | 1357789..1357968 (+) | 180 | WP_034154909.1 | DUF2635 domain-containing protein | - |
| LOY43_RS05930 (LOY43_05915) | - | 1357968..1359464 (+) | 1497 | WP_258709336.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| LOY43_RS05935 (LOY43_05920) | - | 1359532..1359879 (+) | 348 | WP_007908779.1 | phage tail tube protein | - |
| LOY43_RS05940 (LOY43_05925) | - | 1359876..1360172 (+) | 297 | WP_095050430.1 | phage tail assembly protein | - |
| LOY43_RS05945 (LOY43_05930) | - | 1360303..1362075 (+) | 1773 | WP_258709337.1 | phage tail protein | - |
| LOY43_RS05950 (LOY43_05935) | - | 1362062..1363300 (+) | 1239 | WP_095126528.1 | DNA circularization protein | - |
| LOY43_RS05955 (LOY43_05940) | - | 1363303..1364352 (+) | 1050 | WP_220558195.1 | phage baseplate assembly protein | - |
| LOY43_RS05960 (LOY43_05945) | - | 1364490..1364999 (+) | 510 | WP_220558197.1 | phage baseplate assembly protein V | - |
| LOY43_RS05965 (LOY43_05950) | - | 1364999..1365397 (+) | 399 | WP_093436478.1 | phage GP46 family protein | - |
| LOY43_RS05970 (LOY43_05955) | - | 1365387..1366433 (+) | 1047 | WP_093436475.1 | baseplate J/gp47 family protein | - |
| LOY43_RS05975 (LOY43_05960) | - | 1366421..1367020 (+) | 600 | WP_016985041.1 | YmfQ family protein | - |
| LOY43_RS05980 (LOY43_05965) | - | 1367035..1367970 (+) | 936 | WP_258709338.1 | hypothetical protein | - |
| LOY43_RS05985 (LOY43_05970) | - | 1367973..1368374 (+) | 402 | WP_258709339.1 | phage tail assembly chaperone | - |
| LOY43_RS05990 (LOY43_05975) | - | 1368552..1369592 (+) | 1041 | WP_258709340.1 | phage tail protein | - |
| LOY43_RS05995 (LOY43_05980) | - | 1369600..1370160 (+) | 561 | WP_220558205.1 | tail fiber assembly protein | - |
| LOY43_RS06000 (LOY43_05985) | - | 1370244..1371167 (+) | 924 | WP_220558206.1 | hypothetical protein | - |
| LOY43_RS06005 (LOY43_05990) | - | 1371167..1371634 (+) | 468 | WP_220558208.1 | phage tail assembly chaperone | - |
| LOY43_RS06010 (LOY43_05995) | - | 1371670..1372566 (+) | 897 | WP_093436451.1 | gp53-like domain-containing protein | - |
| LOY43_RS06015 (LOY43_06000) | - | 1372567..1373013 (+) | 447 | WP_093436448.1 | phage tail assembly chaperone | - |
| LOY43_RS06020 (LOY43_06005) | - | 1373032..1374192 (+) | 1161 | WP_258709341.1 | hypothetical protein | - |
| LOY43_RS06025 (LOY43_06010) | - | 1374192..1374446 (+) | 255 | WP_220558213.1 | hypothetical protein | - |
| LOY43_RS06030 (LOY43_06015) | - | 1374483..1375049 (+) | 567 | WP_095050439.1 | glycoside hydrolase family 19 protein | - |
| LOY43_RS06035 (LOY43_06020) | - | 1375028..1375546 (+) | 519 | WP_095050440.1 | lysis system i-spanin subunit Rz | - |
| LOY43_RS06040 (LOY43_06025) | - | 1375614..1376114 (+) | 501 | WP_258709342.1 | CinA family protein | - |
| LOY43_RS06045 (LOY43_06030) | recA | 1376198..1377253 (+) | 1056 | WP_007908746.1 | recombinase RecA | Machinery gene |
| LOY43_RS06050 (LOY43_06035) | recX | 1377262..1377732 (+) | 471 | WP_095050442.1 | recombination regulator RecX | - |
| LOY43_RS06055 (LOY43_06040) | - | 1377788..1378906 (-) | 1119 | WP_258709343.1 | TIGR00730 family Rossman fold protein | - |
| LOY43_RS06060 (LOY43_06045) | - | 1379257..1379451 (+) | 195 | WP_077571372.1 | hypothetical protein | - |
| LOY43_RS06065 (LOY43_06050) | - | 1379452..1379877 (-) | 426 | WP_016985722.1 | PA3611 family quorum-sensing-regulated virulence factor | - |
| LOY43_RS06070 (LOY43_06055) | - | 1380067..1380813 (+) | 747 | WP_258709344.1 | tRNA-uridine aminocarboxypropyltransferase | - |
Sequence
Protein
Download Length: 351 a.a. Molecular weight: 37404.95 Da Isoelectric Point: 5.3111
>NTDB_id=627323 LOY43_RS06045 WP_007908746.1 1376198..1377253(+) (recA) [Pseudomonas sp. B21-041]
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEIAAKLEK
QLRDKLLTPAVIDSKASAVKETEDDLADADI
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEIAAKLEK
QLRDKLLTPAVIDSKASAVKETEDDLADADI
Nucleotide
Download Length: 1056 bp
>NTDB_id=627323 LOY43_RS06045 WP_007908746.1 1376198..1377253(+) (recA) [Pseudomonas sp. B21-041]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTGATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCTATCTCCACTGGCTCTCTGGGTCTGGACATCGCACTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCGGAATCCTCCGGTAAAACCACACTGACCTTGTCCGTGATCGCC
CAGGCGCAAAAAGCCGGCGCGACCTGCGCATTCGTCGACGCCGAACACGCCCTCGATCCTGAGTACGCCGGCAAACTGGG
CGTCAACGTCGACGACCTGCTGGTGTCCCAGCCGGACACCGGCGAACAGGCGCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCTGCCCTGGTACCGAAGGCTGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTAATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGTAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTTCGTCTCGACATCCGCCGTACTGGCGCGGTGAAAGAAGGCGACGAAGTGGTTGGTAGCGAA
ACCCGCGTCAAGGTTGTGAAGAACAAGGTCGCTTCGCCATTCCGTCAGGCCGAGTTCCAGATTCTTTATGGCAAGGGCAT
TTATCTCAACGGTGAGATGATCGACCTGGGCGTGCTGCACGGTTTCGTCGAGAAGTCCGGCGCCTGGTATGCCTACGAAG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGACAACCCGGAAATTGCCGCGAAGCTCGAGAAG
CAACTGCGTGACAAGCTGCTTACTCCAGCCGTGATCGACTCCAAGGCCTCAGCAGTCAAAGAGACTGAAGACGACCTGGC
CGACGCTGACATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTGATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCTATCTCCACTGGCTCTCTGGGTCTGGACATCGCACTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCGGAATCCTCCGGTAAAACCACACTGACCTTGTCCGTGATCGCC
CAGGCGCAAAAAGCCGGCGCGACCTGCGCATTCGTCGACGCCGAACACGCCCTCGATCCTGAGTACGCCGGCAAACTGGG
CGTCAACGTCGACGACCTGCTGGTGTCCCAGCCGGACACCGGCGAACAGGCGCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCTGCCCTGGTACCGAAGGCTGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTAATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGTAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTTCGTCTCGACATCCGCCGTACTGGCGCGGTGAAAGAAGGCGACGAAGTGGTTGGTAGCGAA
ACCCGCGTCAAGGTTGTGAAGAACAAGGTCGCTTCGCCATTCCGTCAGGCCGAGTTCCAGATTCTTTATGGCAAGGGCAT
TTATCTCAACGGTGAGATGATCGACCTGGGCGTGCTGCACGGTTTCGTCGAGAAGTCCGGCGCCTGGTATGCCTACGAAG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGACAACCCGGAAATTGCCGCGAAGCTCGAGAAG
CAACTGCGTGACAAGCTGCTTACTCCAGCCGTGATCGACTCCAAGGCCTCAGCAGTCAAAGAGACTGAAGACGACCTGGC
CGACGCTGACATCTGA
Similar proteins
Only experimentally validated proteins are listed.