Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   XFF4834R_RS13425 Genome accession   NC_022541
Coordinates   3199814..3200848 (-) Length   344 a.a.
NCBI ID   WP_003481871.1    Uniprot ID   A0A7Z7J0F3
Organism   Xanthomonas citri pv. fuscans     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3194814..3205848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XFF4834R_RS13410 (XFF4834R_chr27680) csrA 3195926..3196138 (-) 213 WP_003481884.1 carbon storage regulator CsrA -
  XFF4834R_RS13415 (XFF4834R_chr27690) alaS 3196278..3198926 (-) 2649 WP_022559538.1 alanine--tRNA ligase -
  XFF4834R_RS13420 (XFF4834R_chr27700) recX 3199028..3199516 (-) 489 WP_007966764.1 recombination regulator RecX -
  XFF4834R_RS13425 (XFF4834R_chr27710) recA 3199814..3200848 (-) 1035 WP_003481871.1 recombinase RecA Machinery gene
  XFF4834R_RS13430 (XFF4834R_chr27720) lexA 3201021..3201662 (-) 642 WP_007966767.1 transcriptional repressor LexA -
  XFF4834R_RS13435 (XFF4834R_chr27730) ubiB 3201750..3203426 (-) 1677 WP_022559539.1 2-polyprenylphenol 6-hydroxylase -
  XFF4834R_RS13440 (XFF4834R_chr27740) - 3203859..3204353 (-) 495 WP_003481865.1 CinA family protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37176.66 Da        Isoelectric Point: 4.9759

>NTDB_id=62727 XFF4834R_RS13425 WP_003481871.1 3199814..3200848(-) (recA) [Xanthomonas citri pv. fuscans]
MDENKKRALSAALSQIEKQFGKGSVMRMGDRVIEAVEVIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
ECQKNGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDIVVVDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVDKAGAWYSYGDERIGQGKDNARTYLRDNPQVATRL
EAELREKFQPAEAPREAGDDEDKE

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=62727 XFF4834R_RS13425 WP_003481871.1 3199814..3200848(-) (recA) [Xanthomonas citri pv. fuscans]
ATGGACGAGAACAAGAAGCGCGCCCTTTCCGCCGCACTGAGCCAGATCGAAAAGCAATTCGGCAAGGGCTCGGTCATGCG
CATGGGCGACCGCGTCATTGAGGCGGTCGAAGTCATCCCCACCGGCTCGCTGATGCTGGATATCGCCCTGGGGATCGGCG
GCCTGCCGAAGGGCCGCGTGGTCGAAATCTACGGCCCGGAATCCTCCGGCAAGACTACCTTGACCCTGCAAGCCATCGCC
GAGTGCCAGAAGAACGGCGGCACCGCTGCCTTCATCGATGCCGAGCACGCACTGGACCCGATTTATGCGGCCAAGCTGGG
CGTCAATGTCGACGACCTGCTGCTGTCGCAGCCGGATACCGGTGAGCAGGCACTGGAAATTGCCGACATGCTGGTGCGCT
CGGGTTCGGTTGATATCGTGGTGGTCGACTCGGTCGCTGCACTGACGCCGAAGGCAGAAATCGAAGGCGAGATGGGCGAC
CAGCTGCCAGGTTTGCAGGCTCGCCTGATGAGCCAGGCGCTGCGCAAGCTCACCGGCAATATCAAGCGCTCCAACACGCT
GGTGGTCTTCATCAATCAGCTGCGCATGAAGATCGGCGTCATGATGCCTGGCCAGAGCCCGGAAGTGACCACCGGCGGCA
ACGCGCTGAAGTTCTACGCCTCGGTGCGTCTGGATATCCGCCGTATCGGTGCGATCAAGAAGGGCGACGAGATCATCGGT
AACCAGACCAAGATCAAAGTGGTCAAGAACAAGCTGGCGCCTCCGTTCAAGCAGGTCGTGACCGAAATCCTGTATGGCGA
AGGCATCAGTCGCGAGGGCGAATTGATCGACATGGGCGTGGAAGCCAAGCTGGTCGACAAGGCCGGCGCTTGGTACAGCT
ACGGCGATGAGCGCATCGGGCAGGGCAAGGACAACGCGCGAACCTACCTGCGCGACAACCCACAGGTTGCGACCCGGCTG
GAAGCGGAGCTGCGTGAGAAGTTCCAACCTGCCGAAGCACCGCGTGAGGCCGGCGACGACGAAGACAAGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z7J0F3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

70.64

100

0.706
  recA Pseudomonas stutzeri DSM 10701

70.623

97.965

0.692
  recA Acinetobacter baumannii D1279779

71.951

95.349

0.686
  recA Ralstonia pseudosolanacearum GMI1000

75.399

90.988

0.686
  recA Vibrio cholerae strain A1552

70.859

94.767

0.672
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.859

94.767

0.672
  recA Neisseria gonorrhoeae MS11

69.018

94.767

0.654
  recA Neisseria gonorrhoeae MS11

69.018

94.767

0.654
  recA Neisseria gonorrhoeae strain FA1090

69.018

94.767

0.654
  recA Glaesserella parasuis strain SC1401

65.116

100

0.651
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.473

97.093

0.616
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.337

100

0.613
  recA Latilactobacillus sakei subsp. sakei 23K

62.275

97.093

0.605
  recA Helicobacter pylori strain NCTC11637

62.048

96.512

0.599
  recA Helicobacter pylori 26695

61.747

96.512

0.596
  recA Bacillus subtilis subsp. subtilis str. 168

62.769

94.477

0.593
  recA Streptococcus pneumoniae Rx1

61.28

95.349

0.584
  recA Streptococcus mitis SK321

61.28

95.349

0.584
  recA Streptococcus pneumoniae D39

61.28

95.349

0.584
  recA Streptococcus pneumoniae R6

61.28

95.349

0.584
  recA Streptococcus pneumoniae TIGR4

61.28

95.349

0.584
  recA Streptococcus mitis NCTC 12261

60.976

95.349

0.581
  recA Streptococcus pyogenes NZ131

60.606

95.93

0.581
  recA Streptococcus mutans UA159

60.303

95.93

0.578
  recA Lactococcus lactis subsp. cremoris KW2

59.385

94.477

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.485

95.93

0.561

Multiple sequence alignment