Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LMH93_RS21230 Genome accession   NZ_CP087160
Coordinates   4704101..4705168 (-) Length   355 a.a.
NCBI ID   WP_003252365.1    Uniprot ID   I7B6K4
Organism   Pseudomonas sp. CIP-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4699101..4710168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMH93_RS21195 (LMH93_21195) - 4699220..4699585 (-) 366 WP_004574843.1 diacylglycerol kinase -
  LMH93_RS21200 (LMH93_21200) erdR 4699659..4700309 (-) 651 WP_003252375.1 response regulator transcription factor ErdR -
  LMH93_RS21205 (LMH93_21205) - 4700489..4701199 (-) 711 WP_004574842.1 tRNA-uridine aminocarboxypropyltransferase -
  LMH93_RS21210 (LMH93_21210) - 4701416..4701835 (+) 420 WP_003252372.1 quorum-sensing-regulated virulence factor family protein -
  LMH93_RS21215 (LMH93_21215) - 4701850..4702059 (-) 210 WP_003252370.1 hypothetical protein -
  LMH93_RS21220 (LMH93_21220) - 4702220..4703338 (+) 1119 WP_003252368.1 LOG family protein -
  LMH93_RS21225 (LMH93_21225) recX 4703609..4704079 (-) 471 WP_003252366.1 recombination regulator RecX -
  LMH93_RS21230 (LMH93_21230) recA 4704101..4705168 (-) 1068 WP_003252365.1 recombinase RecA Machinery gene
  LMH93_RS21235 (LMH93_21235) - 4705272..4705754 (-) 483 WP_003252362.1 CinA family protein -
  LMH93_RS21240 (LMH93_21240) - 4705811..4706878 (-) 1068 WP_102886221.1 hypothetical protein -
  LMH93_RS21245 (LMH93_21245) mutS 4707063..4709636 (+) 2574 WP_004574840.1 DNA mismatch repair protein MutS -
  LMH93_RS21250 (LMH93_21250) fdxA 4709777..4710100 (+) 324 WP_003252355.1 ferredoxin FdxA -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37544.89 Da        Isoelectric Point: 5.3228

>NTDB_id=627037 LMH93_RS21230 WP_003252365.1 4704101..4705168(-) (recA) [Pseudomonas sp. CIP-10]
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQGIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVSQGLVEKSGAWYAYQGNKIGQGKANAAKYLAENPAIGAEIEK
QIREKLLKAGAAAEAGKAAAAEADADDMADADAGY

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=627037 LMH93_RS21230 WP_003252365.1 4704101..4705168(-) (recA) [Pseudomonas sp. CIP-10]
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGCCAATTCGGTAAAGGCGCGGTCATGCG
CATGGGTGACCATGAGCGTCAAGGCATTCCGGCCATCTCCACCGGCTCGCTGGGCCTGGATATCGCCCTGGGCATCGGCG
GTCTGCCAAAAGGCCGTATCGTCGAGATCTACGGCCCGGAATCGTCGGGTAAGACCACGCTGACCCTGTCTGTCATCGCT
GAAGCGCAGAAGAACGGTGCTACCTGCGCCTTCGTCGACGCTGAACATGCCCTTGACCCTGAGTACGCCGGCAAGCTGGG
CGTCAACGTCGATGACCTGCTGGTTTCGCAGCCGGACACCGGTGAGCAGGCCCTTGAAATCACCGACATGCTGGTGCGTT
CCAATGCGGTCGACGTGATCATTGTCGACTCCGTTGCCGCGCTGGTACCGAAGGCTGAGATCGAAGGCGAGATGGGTGAC
ATGCATGTGGGCCTGCAGGCCCGCCTGATGTCCCAGGCGCTGCGCAAGATCACCGGTAACATCAAGAACGCGAACTGCCT
GGTCATCTTCATCAACCAGATCCGTATGAAGATCGGTGTGATGTTCGGCAGCCCGGAAACCACTACCGGTGGTAACGCCC
TGAAGTTCTATGCTTCGGTCCGTCTGGACATCCGTCGTACCGGCGCGGTCAAGGAAGGCGACGAGGTGGTCGGCAGCGAA
ACCCGCGTCAAGATCGTCAAGAACAAGGTCTCGCCTCCGTTCCGTCAGGCTGAGTTCCAGATTCTTTACGGGAAAGGTAT
CTACCGTAACGGCGAGATCATTGATCTGGGGGTATCTCAGGGCTTGGTCGAGAAGTCCGGTGCCTGGTACGCCTACCAGG
GCAACAAGATCGGTCAAGGCAAAGCCAACGCTGCCAAGTACCTGGCTGAGAACCCGGCTATTGGTGCCGAGATCGAGAAG
CAGATTCGTGAGAAGTTGCTGAAAGCGGGTGCTGCTGCTGAAGCCGGCAAAGCTGCTGCTGCCGAAGCTGATGCCGATGA
CATGGCCGACGCTGACGCCGGTTATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I7B6K4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

90.462

97.465

0.882
  recA Acinetobacter baylyi ADP1

76.758

92.113

0.707
  recA Acinetobacter baumannii D1279779

74.924

93.239

0.699
  recA Vibrio cholerae strain A1552

74.312

92.113

0.685
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.312

92.113

0.685
  recA Glaesserella parasuis strain SC1401

68.571

98.592

0.676
  recA Ralstonia pseudosolanacearum GMI1000

71.045

94.366

0.67
  recA Neisseria gonorrhoeae MS11

71.296

91.268

0.651
  recA Neisseria gonorrhoeae MS11

71.296

91.268

0.651
  recA Neisseria gonorrhoeae strain FA1090

71.296

91.268

0.651
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

92.113

0.594
  recA Helicobacter pylori strain NCTC11637

63.303

92.113

0.583
  recA Helicobacter pylori 26695

62.691

92.113

0.577
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.631

93.239

0.575
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

90.423

0.563
  recA Streptococcus pyogenes NZ131

55.742

100

0.561
  recA Streptococcus mutans UA159

55.932

99.718

0.558
  recA Streptococcus mitis NCTC 12261

56.484

97.746

0.552
  recA Streptococcus mitis SK321

56.484

97.746

0.552
  recA Streptococcus pneumoniae Rx1

58.896

91.831

0.541
  recA Streptococcus pneumoniae D39

58.896

91.831

0.541
  recA Streptococcus pneumoniae R6

58.896

91.831

0.541
  recA Streptococcus pneumoniae TIGR4

58.896

91.831

0.541
  recA Latilactobacillus sakei subsp. sakei 23K

59.19

90.423

0.535
  recA Lactococcus lactis subsp. cremoris KW2

57.276

90.986

0.521
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.828

91.831

0.513