Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LN047_RS07935 Genome accession   NZ_CP087159
Coordinates   1725607..1726668 (+) Length   353 a.a.
NCBI ID   WP_056322539.1    Uniprot ID   A0A2S0I4U9
Organism   Achromobacter sp. JD417     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1720607..1731668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LN047_RS07915 (LN047_07915) - 1720700..1720909 (+) 210 WP_056322527.1 hypothetical protein -
  LN047_RS07920 (LN047_07920) - 1721283..1722944 (-) 1662 WP_373982112.1 MFS transporter -
  LN047_RS07925 (LN047_07925) - 1723140..1724516 (-) 1377 WP_108006845.1 sensor histidine kinase -
  LN047_RS07930 (LN047_07930) - 1724629..1725318 (-) 690 WP_056322537.1 response regulator transcription factor -
  LN047_RS07935 (LN047_07935) recA 1725607..1726668 (+) 1062 WP_056322539.1 recombinase RecA Machinery gene
  LN047_RS07940 (LN047_07940) recX 1726792..1727520 (+) 729 WP_175156837.1 recombination regulator RecX -
  LN047_RS07945 (LN047_07945) - 1727618..1728535 (-) 918 WP_056322542.1 LysR family transcriptional regulator -
  LN047_RS07950 (LN047_07950) metE 1728721..1731018 (+) 2298 WP_373981465.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37875.26 Da        Isoelectric Point: 5.3334

>NTDB_id=627013 LN047_RS07935 WP_056322539.1 1725607..1726668(+) (recA) [Achromobacter sp. JD417]
MDDKTTKAAASEKAKALAAALSQIEKQFGKGSIMRYGDNEVSHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK
TTLTLQVVAEMQKLGGTCAFVDAEHALDVQYASKLGVNLADLLISQPDTGEQALEITDALVRSGSVDLIVVDSVAALVPK
AEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIK
KGDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGAGISREGEIIDLGVAANVVDKSGAWYSYNGNRIGQGKDNVREYLKEH
KDMAIEIENRVRENQGIVSRAAEFVPTAEDTAE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=627013 LN047_RS07935 WP_056322539.1 1725607..1726668(+) (recA) [Achromobacter sp. JD417]
ATGGACGACAAAACCACCAAGGCCGCCGCTTCGGAAAAGGCCAAGGCGCTCGCCGCAGCGCTTTCGCAGATCGAAAAGCA
GTTCGGCAAGGGCTCGATCATGCGCTACGGCGACAACGAGGTCTCGCACGACATCCAGGTGGTTTCCACGGGTTCGCTCG
GTCTGGATATCGCGCTGGGCGTCGGCGGCTTGCCGCGCGGCCGTGTCGTCGAAATCTACGGTCCGGAATCGTCGGGCAAG
ACGACCCTCACGCTGCAGGTCGTCGCCGAAATGCAAAAGCTGGGCGGCACCTGCGCCTTCGTCGACGCGGAACACGCACT
GGATGTCCAATATGCGTCCAAGCTGGGCGTCAATCTGGCCGACCTGCTGATCTCGCAGCCGGACACGGGCGAGCAGGCGC
TGGAAATCACCGACGCGCTGGTGCGCTCGGGTTCGGTCGACCTGATCGTCGTCGACTCGGTGGCCGCGCTGGTGCCCAAG
GCCGAAATCGAAGGCGAAATGGGCGATTCGCTGCCCGGCCTGCAGGCTCGCCTGATGAGCCAGGCGCTGCGCAAGCTGAC
CGCCACCATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGGATGAAGATCGGCGTCATGTTCGGCAACC
CCGAAACCACCACCGGCGGCAACGCGCTCAAGTTCTACGCGTCCGTGCGCCTGGATATCCGCCGCATCGGCTCCATCAAG
AAGGGCGACGAGGTCGTCGGCAACGAAACCCGCGTCAAGGTCGTCAAGAACAAGGTTGCGCCGCCTTTCAAGCAGGCCGA
GTTCGACATCATGTATGGCGCCGGCATCTCGCGCGAAGGCGAAATCATCGACCTGGGCGTGGCCGCCAACGTCGTCGACA
AGTCGGGCGCCTGGTACAGCTACAACGGCAACCGCATCGGCCAGGGCAAGGACAACGTGCGCGAATACCTGAAAGAGCAC
AAGGACATGGCCATCGAAATCGAAAACCGCGTCCGCGAAAACCAGGGCATCGTCAGCCGCGCCGCTGAATTCGTGCCCAC
GGCGGAAGACACCGCCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S0I4U9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.534

99.717

0.813
  recA Pseudomonas stutzeri DSM 10701

72.141

96.601

0.697
  recA Neisseria gonorrhoeae MS11

72.561

92.918

0.674
  recA Neisseria gonorrhoeae MS11

72.561

92.918

0.674
  recA Neisseria gonorrhoeae strain FA1090

72.561

92.918

0.674
  recA Acinetobacter baylyi ADP1

69.501

96.601

0.671
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.52

90.935

0.669
  recA Vibrio cholerae strain A1552

73.52

90.935

0.669
  recA Acinetobacter baumannii D1279779

72.897

90.935

0.663
  recA Glaesserella parasuis strain SC1401

71.651

90.935

0.652
  recA Latilactobacillus sakei subsp. sakei 23K

63.743

96.884

0.618
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.865

94.334

0.612
  recA Bacillus subtilis subsp. subtilis str. 168

65.138

92.635

0.603
  recA Helicobacter pylori 26695

61.383

98.3

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.337

92.351

0.603
  recA Helicobacter pylori strain NCTC11637

61.095

98.3

0.601
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.158

91.501

0.578
  recA Streptococcus pneumoniae TIGR4

59.706

96.317

0.575
  recA Streptococcus pneumoniae D39

59.706

96.317

0.575
  recA Streptococcus pneumoniae R6

59.706

96.317

0.575
  recA Streptococcus pneumoniae Rx1

59.706

96.317

0.575
  recA Streptococcus mitis NCTC 12261

59.118

96.317

0.569
  recA Streptococcus mitis SK321

59.118

96.317

0.569
  recA Lactococcus lactis subsp. cremoris KW2

59.118

96.317

0.569
  recA Streptococcus pyogenes NZ131

59.701

94.901

0.567
  recA Streptococcus mutans UA159

57.941

96.317

0.558