Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LMH63_RS07805 Genome accession   NZ_CP086615
Coordinates   1723529..1724560 (+) Length   343 a.a.
NCBI ID   WP_109680382.1    Uniprot ID   A0A2U2MVT1
Organism   Spiribacter halobius strain E85     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1718529..1729560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMH63_RS07785 (LMH63_07785) - 1718599..1720281 (-) 1683 WP_158280400.1 MinD/ParA family protein -
  LMH63_RS07790 (LMH63_07790) - 1720405..1721706 (+) 1302 WP_109679150.1 GGDEF domain-containing protein -
  LMH63_RS07795 (LMH63_07795) - 1721749..1722609 (+) 861 WP_109679151.1 HDOD domain-containing protein -
  LMH63_RS07800 (LMH63_07800) thpR 1722872..1723390 (+) 519 WP_109680383.1 RNA 2',3'-cyclic phosphodiesterase -
  LMH63_RS07805 (LMH63_07805) recA 1723529..1724560 (+) 1032 WP_109680382.1 recombinase RecA Machinery gene
  LMH63_RS07810 (LMH63_07810) - 1724568..1725044 (+) 477 WP_229332756.1 regulatory protein RecX -
  LMH63_RS07815 (LMH63_07815) alaS 1725057..1727663 (+) 2607 WP_109680381.1 alanine--tRNA ligase -
  LMH63_RS07820 (LMH63_07820) - 1727697..1728965 (+) 1269 WP_109680380.1 aspartate kinase -
  LMH63_RS07825 (LMH63_07825) csrA 1729191..1729397 (+) 207 WP_109680379.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 36908.03 Da        Isoelectric Point: 5.5507

>NTDB_id=625716 LMH63_RS07805 WP_109680382.1 1723529..1724560(+) (recA) [Spiribacter halobius strain E85]
MDEDRKKALGAALGQIEKQFGKGAVMRMGDARAVRDVPAISTGSLTLDIALGVGGLPRGRVVEIYGPESSGKTTLTLHAI
AQAQKAGGTAAFVDAEHALDPDYAEKLGVNVDELLVSQPDTGEQALEIADMLVRSSAVDIVVVDSVAALTPKAEIEGEMG
DSHVGLQARLMSQALRKLTANIKRSNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRMDIRRLGAIKKGDEVVGN
ETRVKVVKNKMAPPFRQAEFEILYGEGISREGELIDLGVKQGLVEKSGAWYSYNGDRIGQGKDNVRNHLKANPQIADELE
AKLREQLLSRPSRETAEEDQADA

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=625716 LMH63_RS07805 WP_109680382.1 1723529..1724560(+) (recA) [Spiribacter halobius strain E85]
ATGGACGAAGACCGCAAGAAGGCGCTGGGCGCCGCGCTGGGCCAGATCGAGAAGCAGTTCGGCAAGGGCGCGGTGATGCG
CATGGGCGATGCCCGTGCGGTGCGCGACGTGCCGGCGATCTCCACCGGCTCGCTGACCCTGGACATCGCTCTCGGCGTCG
GCGGTCTGCCGCGCGGCCGGGTGGTGGAGATCTACGGCCCGGAATCCTCCGGCAAGACCACGCTCACCCTGCACGCCATC
GCCCAGGCGCAGAAGGCCGGCGGCACCGCAGCCTTTGTCGACGCCGAGCATGCCCTGGATCCGGACTATGCCGAGAAGCT
CGGCGTCAACGTCGACGAGCTGCTTGTGTCGCAGCCGGATACCGGCGAGCAGGCGCTGGAGATCGCGGACATGCTGGTGC
GCTCCTCGGCGGTGGACATCGTGGTGGTGGACTCGGTGGCGGCGCTGACCCCGAAGGCCGAGATCGAGGGCGAGATGGGC
GACTCGCATGTCGGCCTGCAGGCGCGGCTGATGTCCCAGGCCCTGCGCAAGCTGACGGCGAACATCAAGCGCTCCAACAC
GCTGGTGGTCTTCATCAACCAGATCCGCATGAAGATCGGCGTAATGTTCGGCAGCCCCGAGACCACCACCGGCGGCAACG
CGCTGAAGTTCTACGCCTCCGTGCGCATGGATATCCGCCGCCTGGGGGCGATCAAGAAGGGCGACGAGGTGGTGGGTAAC
GAGACCCGCGTCAAGGTCGTCAAGAACAAGATGGCACCGCCGTTCCGCCAGGCCGAGTTCGAGATCCTCTACGGCGAGGG
CATCTCGCGCGAGGGCGAGCTCATCGACCTCGGCGTGAAGCAGGGCCTCGTGGAGAAGTCCGGTGCCTGGTACAGCTATA
ACGGCGACCGCATCGGCCAGGGCAAGGACAACGTCCGCAACCACCTGAAGGCCAACCCGCAGATCGCCGACGAGCTGGAG
GCCAAGCTGCGCGAGCAGCTGCTCAGCCGGCCGAGCCGCGAGACCGCCGAGGAGGATCAGGCCGACGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U2MVT1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

76.301

100

0.77
  recA Acinetobacter baylyi ADP1

73.977

99.708

0.738
  recA Vibrio cholerae strain A1552

75.988

95.918

0.729
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75.988

95.918

0.729
  recA Neisseria gonorrhoeae MS11

76.543

94.461

0.723
  recA Neisseria gonorrhoeae MS11

76.543

94.461

0.723
  recA Neisseria gonorrhoeae strain FA1090

76.543

94.461

0.723
  recA Acinetobacter baumannii D1279779

74.772

95.918

0.717
  recA Ralstonia pseudosolanacearum GMI1000

76.266

92.128

0.703
  recA Glaesserella parasuis strain SC1401

71.212

96.21

0.685
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.569

97.376

0.638
  recA Bacillus subtilis subsp. subtilis str. 168

65.635

94.169

0.618
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.329

95.627

0.615
  recA Streptococcus mutans UA159

63.72

95.627

0.609
  recA Helicobacter pylori strain NCTC11637

63.72

95.627

0.609
  recA Streptococcus mitis NCTC 12261

60.465

100

0.606
  recA Helicobacter pylori 26695

63.11

95.627

0.604
  recA Streptococcus pyogenes NZ131

63.19

95.044

0.601
  recA Streptococcus pneumoniae Rx1

60.588

99.125

0.601
  recA Streptococcus pneumoniae D39

60.588

99.125

0.601
  recA Streptococcus pneumoniae R6

60.588

99.125

0.601
  recA Streptococcus pneumoniae TIGR4

60.588

99.125

0.601
  recA Streptococcus mitis SK321

60.651

98.542

0.598
  recA Latilactobacillus sakei subsp. sakei 23K

63.354

93.878

0.595
  recA Lactococcus lactis subsp. cremoris KW2

60.308

94.752

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.146

95.627

0.566