Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VIBNI_RS00710 Genome accession   NC_022528
Coordinates   144520..145560 (+) Length   346 a.a.
NCBI ID   WP_022549558.1    Uniprot ID   -
Organism   Vibrio nigripulchritudo     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 139520..150560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIBNI_RS00695 (VIBNI_A0143) - 142048..142758 (+) 711 WP_022549555.1 phospholipase D-like domain-containing protein -
  VIBNI_RS00700 (VIBNI_A0144) - 142771..143832 (+) 1062 WP_022549556.1 toxic anion resistance protein -
  VIBNI_RS00705 (VIBNI_A0145) pncC 143924..144409 (+) 486 WP_022549557.1 nicotinamide-nucleotide amidase -
  VIBNI_RS00710 (VIBNI_A0147) recA 144520..145560 (+) 1041 WP_022549558.1 recombinase RecA Machinery gene
  VIBNI_RS00715 (VIBNI_A0148) recX 145653..146114 (+) 462 WP_022549559.1 recombination regulator RecX -
  VIBNI_RS00720 (VIBNI_A0149) alaS 146372..148954 (+) 2583 WP_022549560.1 alanine--tRNA ligase -
  VIBNI_RS00725 (VIBNI_A0150) - 149046..150242 (+) 1197 WP_022549561.1 aspartate kinase -
  VIBNI_RS00730 (VIBNI_A0151) csrA 150329..150526 (+) 198 WP_004401290.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37461.90 Da        Isoelectric Point: 4.9706

>NTDB_id=62560 VIBNI_RS00710 WP_022549558.1 144520..145560(+) (recA) [Vibrio nigripulchritudo]
MDDNKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPIYAKKLGVDIEALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEVVGNE
TRIKVVKNKIAAPFKQAETQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYNGDKIGQGKANAGKFLRENSNIALEIDS
KLREMLLTTAQPEEQEQGEMPKEEEF

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=62560 VIBNI_RS00710 WP_022549558.1 144520..145560(+) (recA) [Vibrio nigripulchritudo]
ATGGACGATAACAAACAAAAGGCGTTAGCCGCAGCACTTGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCTATTATGCG
CCTTGGTGACAACCGCGCGATGGATGTTGAAACCATCTCAACGGGTTCTCTGTCACTGGATATCGCTTTGGGTGCTGGTG
GTCTGCCGATGGGACGTATCGTAGAAATCTACGGTCCTGAGAGTTCGGGTAAAACCACGCTAACTCTTGAGCTTATCGCA
GCAGCACAACGTGAAGGTAAAACCTGTGCATTTATCGATGCAGAGCACGCGCTAGACCCTATCTACGCGAAGAAGCTTGG
TGTCGATATCGAAGCACTGCTTGTTTCTCAGCCTGATACAGGTGAGCAAGCGCTGGAAATCTGTGACGCGCTGGCACGTT
CTGGTGCTATCGACGTAATGGTAGTTGACTCCGTAGCAGCTCTAACACCAAAAGCGGAAATCGAAGGTGAAATGGGCGAC
AGCCACATGGGCTTGCAAGCACGTATGCTTTCTCAGGCTATGCGTAAGCTAACAGGTAACCTAAAGCAGTCTAACTGTAT
GTGTATCTTCATCAACCAGATCCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACCACCACAGGTGGTAACGCAC
TGAAATTTTACGCATCTGTTCGTCTTGATATCCGCCGTACTGGTTCTATCAAAGATGGTGACGAAGTTGTTGGTAACGAA
ACTCGCATTAAAGTCGTTAAGAACAAGATTGCTGCACCGTTTAAGCAAGCTGAAACACAAATCATGTACGGTCAGGGTTT
CAACCGCGAAGGTGAACTGATTGATCTGGGTGTGAAGCACAAGCTGGTTGAGAAAGCGGGTGCTTGGTACAGCTACAACG
GCGACAAGATTGGTCAGGGTAAAGCAAACGCAGGCAAATTCCTTCGTGAAAACTCGAACATTGCACTAGAAATCGATAGT
AAACTGCGTGAGATGCTACTCACGACGGCTCAGCCTGAAGAGCAAGAACAAGGCGAAATGCCAAAAGAAGAAGAGTTTTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

87.252

100

0.89
  recA Vibrio cholerae O1 biovar El Tor strain E7946

87.252

100

0.89
  recA Acinetobacter baumannii D1279779

71.594

99.711

0.714
  recA Acinetobacter baylyi ADP1

71.098

100

0.711
  recA Pseudomonas stutzeri DSM 10701

74.242

95.376

0.708
  recA Neisseria gonorrhoeae MS11

67.622

100

0.682
  recA Neisseria gonorrhoeae MS11

67.622

100

0.682
  recA Neisseria gonorrhoeae strain FA1090

67.622

100

0.682
  recA Glaesserella parasuis strain SC1401

70.062

93.642

0.656
  recA Ralstonia pseudosolanacearum GMI1000

71.656

90.751

0.65
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.933

99.133

0.604
  recA Streptococcus pneumoniae D39

58.857

100

0.595
  recA Streptococcus pneumoniae TIGR4

58.857

100

0.595
  recA Streptococcus pneumoniae R6

58.857

100

0.595
  recA Streptococcus pneumoniae Rx1

58.857

100

0.595
  recA Bacillus subtilis subsp. subtilis str. 168

63.863

92.775

0.592
  recA Helicobacter pylori 26695

62.385

94.509

0.59
  recA Helicobacter pylori strain NCTC11637

62.08

94.509

0.587
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.423

95.665

0.578
  recA Latilactobacillus sakei subsp. sakei 23K

58.017

99.133

0.575
  recA Streptococcus mutans UA159

60.923

93.931

0.572
  recA Streptococcus pyogenes NZ131

60.923

93.931

0.572
  recA Streptococcus mitis NCTC 12261

61.3

93.353

0.572
  recA Streptococcus mitis SK321

60.991

93.353

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.502

92.197

0.558
  recA Lactococcus lactis subsp. cremoris KW2

59.443

93.353

0.555

Multiple sequence alignment