Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | LMF30_RS14700 | Genome accession | NZ_CP086368 |
| Coordinates | 3047962..3049023 (-) | Length | 353 a.a. |
| NCBI ID | WP_003812760.1 | Uniprot ID | K0MEU1 |
| Organism | Bordetella pertussis CS | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3047962..3089656 | 3047962..3049023 | within | 0 |
Gene organization within MGE regions
Location: 3047962..3089656
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LMF30_RS14700 (LMF30_14705) | recA | 3047962..3049023 (-) | 1062 | WP_003812760.1 | recombinase RecA | Machinery gene |
| LMF30_RS14705 (LMF30_14710) | - | 3049263..3049952 (+) | 690 | WP_003812762.1 | response regulator transcription factor | - |
| LMF30_RS14710 (LMF30_14715) | - | 3050068..3051426 (+) | 1359 | WP_010930991.1 | sensor histidine kinase | - |
| LMF30_RS14715 (LMF30_14720) | - | 3051621..3053297 (+) | 1677 | WP_003820458.1 | MFS transporter | - |
| LMF30_RS14720 (LMF30_14725) | - | 3053549..3054325 (-) | 777 | WP_015041674.1 | enoyl-CoA hydratase/isomerase family protein | - |
| LMF30_RS14725 (LMF30_14730) | - | 3054353..3055417 (-) | 1065 | WP_010930993.1 | ABC transporter ATP-binding protein | - |
| LMF30_RS14730 (LMF30_14735) | - | 3055414..3057165 (-) | 1752 | WP_010930994.1 | iron ABC transporter permease | - |
| LMF30_RS14735 (LMF30_14740) | - | 3057194..3058231 (-) | 1038 | WP_004567469.1 | extracellular solute-binding protein | - |
| LMF30_RS14740 (LMF30_14745) | - | 3058269..3059015 (-) | 747 | WP_010930995.1 | SDR family oxidoreductase | - |
| LMF30_RS14745 (LMF30_14750) | - | 3059016..3059459 (-) | 444 | WP_003820449.1 | MaoC/PaaZ C-terminal domain-containing protein | - |
| LMF30_RS14750 (LMF30_14755) | - | 3059460..3059852 (-) | 393 | WP_010930996.1 | OB-fold domain-containing protein | - |
| LMF30_RS14755 (LMF30_14760) | - | 3059860..3061023 (-) | 1164 | WP_010930997.1 | hypothetical protein | - |
| LMF30_RS14760 (LMF30_14765) | - | 3061239..3062126 (+) | 888 | WP_010930998.1 | LysR family transcriptional regulator | - |
| LMF30_RS14765 (LMF30_14770) | - | 3062143..3063450 (+) | 1308 | WP_023994674.1 | CaiB/BaiF CoA-transferase family protein | - |
| LMF30_RS20125 | - | 3063703..3063918 (-) | 216 | Protein_2905 | hypothetical protein | - |
| LMF30_RS14775 (LMF30_14780) | - | 3064072..3064971 (+) | 900 | WP_003812788.1 | recombination-associated protein RdgC | - |
| LMF30_RS14780 (LMF30_14785) | - | 3065011..3066306 (-) | 1296 | WP_010926366.1 | aspartate carbamoyltransferase | - |
| LMF30_RS14785 (LMF30_14790) | - | 3066413..3066826 (-) | 414 | WP_003820436.1 | membrane protein | - |
| LMF30_RS14790 (LMF30_14795) | - | 3066828..3067262 (-) | 435 | WP_010931001.1 | lipoprotein | - |
| LMF30_RS14795 (LMF30_14800) | - | 3067388..3067519 (-) | 132 | WP_003812797.1 | entericidin A/B family lipoprotein | - |
| LMF30_RS14800 (LMF30_14805) | - | 3067695..3068435 (+) | 741 | WP_023853497.1 | endonuclease | - |
| LMF30_RS14805 (LMF30_14810) | - | 3068577..3068909 (-) | 333 | WP_023853503.1 | hypothetical protein | - |
| LMF30_RS14815 (LMF30_14820) | - | 3069647..3070321 (-) | 675 | Protein_2913 | IS481-like element IS481 family transposase | - |
| LMF30_RS14820 (LMF30_14825) | - | 3070316..3070648 (+) | 333 | Protein_2914 | IS481 family transposase | - |
| LMF30_RS14825 (LMF30_14830) | - | 3070657..3070839 (+) | 183 | WP_004567479.1 | hypothetical protein | - |
| LMF30_RS14830 (LMF30_14835) | - | 3070939..3071535 (-) | 597 | WP_010931004.1 | lipoprotein | - |
| LMF30_RS14835 (LMF30_14840) | - | 3071719..3072810 (+) | 1092 | WP_010931005.1 | hypothetical protein | - |
| LMF30_RS14845 (LMF30_14850) | - | 3073310..3073720 (-) | 411 | WP_003812822.1 | MerR family transcriptional regulator | - |
| LMF30_RS14850 (LMF30_14855) | - | 3073779..3074120 (-) | 342 | WP_010931006.1 | integration host factor subunit alpha | - |
| LMF30_RS14855 (LMF30_14860) | pheT | 3074126..3076543 (-) | 2418 | WP_010931007.1 | phenylalanine--tRNA ligase subunit beta | - |
| LMF30_RS14860 (LMF30_14865) | pheS | 3076556..3077578 (-) | 1023 | WP_010926359.1 | phenylalanine--tRNA ligase subunit alpha | - |
| LMF30_RS14865 (LMF30_14870) | rplT | 3077653..3078012 (-) | 360 | WP_003812832.1 | 50S ribosomal protein L20 | - |
| LMF30_RS14870 (LMF30_14875) | rpmI | 3078028..3078225 (-) | 198 | WP_003812834.1 | 50S ribosomal protein L35 | - |
| LMF30_RS14875 (LMF30_14880) | - | 3078561..3079512 (-) | 952 | Protein_2924 | IS481-like element IS481 family transposase | - |
| LMF30_RS14880 (LMF30_14885) | dut | 3079707..3080156 (+) | 450 | WP_003816756.1 | dUTP diphosphatase | - |
| LMF30_RS14885 (LMF30_14890) | - | 3080153..3081103 (-) | 951 | WP_010929584.1 | IS481-like element IS481 family transposase | - |
| LMF30_RS14890 (LMF30_14895) | - | 3081214..3082662 (+) | 1449 | WP_010931008.1 | PLP-dependent aminotransferase family protein | - |
| LMF30_RS14895 (LMF30_14900) | - | 3082777..3083058 (-) | 282 | WP_010931009.1 | hypothetical protein | - |
| LMF30_RS14900 (LMF30_14905) | - | 3083162..3084112 (+) | 951 | WP_010931070.1 | IS481-like element IS481 family transposase | - |
| LMF30_RS14905 (LMF30_14910) | - | 3084357..3085070 (-) | 714 | WP_003820420.1 | class I SAM-dependent methyltransferase | - |
| LMF30_RS14910 (LMF30_14915) | - | 3085193..3085420 (-) | 228 | WP_019247724.1 | GNAT family N-acetyltransferase | - |
| LMF30_RS14920 (LMF30_14925) | - | 3085715..3086353 (-) | 639 | WP_003816758.1 | DedA family protein | - |
| LMF30_RS14925 (LMF30_14930) | - | 3086462..3087496 (+) | 1035 | WP_010931011.1 | metal-dependent hydrolase | - |
| LMF30_RS14930 (LMF30_14935) | - | 3087493..3088443 (-) | 951 | WP_010929591.1 | IS481-like element IS481 family transposase | - |
| LMF30_RS14935 (LMF30_14940) | - | 3088518..3088850 (+) | 333 | WP_224019493.1 | MerR family DNA-binding protein | - |
| LMF30_RS14940 (LMF30_14945) | - | 3088859..3089383 (-) | 525 | WP_010931012.1 | DNA-binding protein | - |
| LMF30_RS14945 (LMF30_14950) | - | 3089387..3089656 (-) | 270 | WP_004567322.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 353 a.a. Molecular weight: 37949.30 Da Isoelectric Point: 5.1842
>NTDB_id=624524 LMF30_RS14700 WP_003812760.1 3047962..3049023(-) (recA) [Bordetella pertussis CS]
MDDKTSKAAAAEKAKALAAALSQIEKQFGKGSIMRYGDNEVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEVYGPESSGK
TTLTLQVIAEMQKLGGTCAFVDAEHALDVQYASKLGVNLTDLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPK
AEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIK
KGDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGSGISREGEIIDLGVQANVVDKSGAWYSYSGNRIGQGKDNVREYLKEH
KEMAIEIENKVRENQGIVSRAATFPASEAEDGE
MDDKTSKAAAAEKAKALAAALSQIEKQFGKGSIMRYGDNEVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEVYGPESSGK
TTLTLQVIAEMQKLGGTCAFVDAEHALDVQYASKLGVNLTDLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPK
AEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIK
KGDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGSGISREGEIIDLGVQANVVDKSGAWYSYSGNRIGQGKDNVREYLKEH
KEMAIEIENKVRENQGIVSRAATFPASEAEDGE
Nucleotide
Download Length: 1062 bp
>NTDB_id=624524 LMF30_RS14700 WP_003812760.1 3047962..3049023(-) (recA) [Bordetella pertussis CS]
ATGGACGACAAAACCAGCAAGGCCGCCGCGGCCGAGAAAGCCAAGGCGCTGGCCGCCGCGCTGTCGCAGATCGAAAAGCA
GTTCGGCAAGGGCTCGATCATGCGCTATGGCGACAACGAGGTCGAACACGACATCCAGGTCGTGTCCACCGGTTCGCTGG
GGCTGGACATCGCGCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTGATCGAGGTCTACGGCCCCGAGTCGTCCGGCAAG
ACCACGCTCACGCTGCAGGTCATCGCCGAAATGCAGAAGCTGGGCGGCACCTGCGCCTTCGTCGACGCCGAACACGCGCT
GGACGTGCAATACGCCTCCAAGCTGGGGGTCAACCTGACCGACCTGCTGATCTCCCAGCCGGACACGGGCGAGCAGGCCC
TCGAGATCACCGACGCGCTGGTGCGCTCGGGCTCGGTCGACCTGATCGTCATCGACTCGGTCGCGGCGCTGGTGCCCAAG
GCCGAAATCGAAGGCGAGATGGGCGACTCCCTGCCGGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGAC
GGCCACCATCAAGCGCACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACC
CCGAAACCACCACCGGCGGCAACGCGCTCAAGTTCTATTCCTCGGTGCGCCTGGACATCCGCCGCATCGGCGCCATCAAG
AAGGGCGACGAGGTGGTCGGCAACGAAACCCGCGTCAAGGTGGTCAAGAACAAGGTGGCGCCGCCGTTCAAGCAGGCCGA
GTTCGACATCATGTATGGCAGCGGCATCTCGCGCGAAGGCGAAATCATCGACCTGGGCGTGCAAGCCAATGTGGTCGACA
AGTCCGGCGCCTGGTACAGCTACAGCGGCAACCGCATCGGCCAGGGCAAGGACAATGTGCGCGAGTACCTGAAAGAGCAC
AAGGAAATGGCCATCGAGATCGAAAACAAGGTGCGCGAGAACCAGGGCATAGTCAGCCGCGCCGCCACCTTTCCGGCCAG
CGAAGCCGAAGACGGCGAATAA
ATGGACGACAAAACCAGCAAGGCCGCCGCGGCCGAGAAAGCCAAGGCGCTGGCCGCCGCGCTGTCGCAGATCGAAAAGCA
GTTCGGCAAGGGCTCGATCATGCGCTATGGCGACAACGAGGTCGAACACGACATCCAGGTCGTGTCCACCGGTTCGCTGG
GGCTGGACATCGCGCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTGATCGAGGTCTACGGCCCCGAGTCGTCCGGCAAG
ACCACGCTCACGCTGCAGGTCATCGCCGAAATGCAGAAGCTGGGCGGCACCTGCGCCTTCGTCGACGCCGAACACGCGCT
GGACGTGCAATACGCCTCCAAGCTGGGGGTCAACCTGACCGACCTGCTGATCTCCCAGCCGGACACGGGCGAGCAGGCCC
TCGAGATCACCGACGCGCTGGTGCGCTCGGGCTCGGTCGACCTGATCGTCATCGACTCGGTCGCGGCGCTGGTGCCCAAG
GCCGAAATCGAAGGCGAGATGGGCGACTCCCTGCCGGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGAC
GGCCACCATCAAGCGCACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACC
CCGAAACCACCACCGGCGGCAACGCGCTCAAGTTCTATTCCTCGGTGCGCCTGGACATCCGCCGCATCGGCGCCATCAAG
AAGGGCGACGAGGTGGTCGGCAACGAAACCCGCGTCAAGGTGGTCAAGAACAAGGTGGCGCCGCCGTTCAAGCAGGCCGA
GTTCGACATCATGTATGGCAGCGGCATCTCGCGCGAAGGCGAAATCATCGACCTGGGCGTGCAAGCCAATGTGGTCGACA
AGTCCGGCGCCTGGTACAGCTACAGCGGCAACCGCATCGGCCAGGGCAAGGACAATGTGCGCGAGTACCTGAAAGAGCAC
AAGGAAATGGCCATCGAGATCGAAAACAAGGTGCGCGAGAACCAGGGCATAGTCAGCCGCGCCGCCACCTTTCCGGCCAG
CGAAGCCGAAGACGGCGAATAA
Similar proteins
Only experimentally validated proteins are listed.