Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LL668_RS04355 Genome accession   NZ_CP086257
Coordinates   986446..987513 (+) Length   355 a.a.
NCBI ID   WP_004914068.1    Uniprot ID   A0A6G6PGM8
Organism   Providencia rettgeri strain KM4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 981446..992513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL668_RS04335 (LL668_04340) aroL 981834..982331 (+) 498 WP_196719821.1 shikimate kinase AroL -
  LL668_RS04340 (LL668_04345) aas 982472..984619 (+) 2148 WP_109911976.1 bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase -
  LL668_RS04345 (LL668_04350) lplT 984621..985823 (+) 1203 WP_109911977.1 lysophospholipid transporter LplT -
  LL668_RS04350 (LL668_04355) pncC 985838..986341 (+) 504 WP_109911978.1 nicotinamide-nucleotide amidase -
  LL668_RS04355 (LL668_04360) recA 986446..987513 (+) 1068 WP_004914068.1 recombinase RecA Machinery gene
  LL668_RS04360 (LL668_04365) alaS 987840..990467 (+) 2628 WP_164528478.1 alanine--tRNA ligase -
  LL668_RS04365 (LL668_04370) csrA 990696..990881 (+) 186 WP_004264815.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38227.53 Da        Isoelectric Point: 4.8129

>NTDB_id=624073 LL668_RS04355 WP_004914068.1 986446..987513(+) (recA) [Providencia rettgeri strain KM4]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDVALGAGGLPLGRIVEIYGPESSGKTTLTLQV
IAAAQRSGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKTSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKNGEEIVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINTFGELIDLGVKHKLIEKAGAWYSYNGDKIGQGKANSTNYLKEHPEVAQEI
DTKLREMLLNHTGEFSSAATDFINDSDEEETPEEF

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=624073 LL668_RS04355 WP_004914068.1 986446..987513(+) (recA) [Providencia rettgeri strain KM4]
ATGGCTATTGATGAAAACAAACAAAAAGCACTTGCAGCAGCATTAGGCCAAATTGAAAAACAATTTGGTAAAGGTTCCAT
TATGCGTCTTGGTGAAGACCGCTCTATGGATGTTGAAACTATCTCAACAGGCTCCTTATCCCTTGATGTTGCATTGGGTG
CTGGTGGCTTGCCACTAGGTCGTATTGTTGAAATCTACGGCCCTGAATCCTCAGGTAAAACAACACTAACCCTGCAAGTT
ATTGCAGCAGCACAACGTAGCGGTAAAACGTGTGCTTTCATCGATGCTGAACACGCTTTAGACCCTATCTATGCTAAAAA
ATTAGGCGTCGATATTGATAACTTACTGTGCTCTCAACCTGATACCGGTGAACAAGCGCTAGAAATTTGTGATGCATTAA
CTCGCTCAGGTGCGGTTGATGTAATCATCGTTGACTCCGTTGCTGCGTTAACACCAAAAGCAGAAATTGAAGGTGAAATT
GGTGATTCACATATGGGCTTAGCTGCTCGTATGATGAGCCAAGCAATGCGTAAGTTAGCGGGTAACTTAAAAACATCTAA
TACCCTACTGATCTTTATCAACCAAATTCGTATGAAGATTGGTGTTATGTTTGGTAACCCAGAAACAACAACGGGTGGTA
ATGCATTAAAATTTTATGCATCTGTTCGTTTAGATATCCGTCGTATTGGTGCAGTGAAAAATGGCGAGGAAATTGTCGGT
AGTGAAACTCGCGTTAAAGTGGTAAAAAACAAAGTTGCAGCGCCATTTAAACAAGCTGAATTCCAAATTTTGTATGGTGA
AGGTATTAATACCTTCGGCGAGTTAATTGATTTGGGGGTAAAACACAAATTAATTGAAAAAGCAGGGGCTTGGTATAGCT
ATAACGGCGATAAAATTGGCCAAGGTAAAGCTAATTCAACAAATTATTTAAAAGAGCACCCTGAAGTCGCTCAAGAAATT
GATACCAAACTGCGTGAAATGTTATTAAACCACACTGGTGAATTTAGCAGTGCTGCAACAGACTTTATCAATGATTCTGA
TGAAGAAGAAACACCAGAAGAATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G6PGM8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

80.168

100

0.808
  recA Vibrio cholerae O1 biovar El Tor strain E7946

80.168

100

0.808
  recA Pseudomonas stutzeri DSM 10701

75.535

92.113

0.696
  recA Acinetobacter baumannii D1279779

70.402

98.028

0.69
  recA Acinetobacter baylyi ADP1

70.115

98.028

0.687
  recA Glaesserella parasuis strain SC1401

68.661

98.873

0.679
  recA Neisseria gonorrhoeae MS11

65.439

99.437

0.651
  recA Neisseria gonorrhoeae MS11

65.439

99.437

0.651
  recA Neisseria gonorrhoeae strain FA1090

65.439

99.437

0.651
  recA Ralstonia pseudosolanacearum GMI1000

70.74

87.606

0.62
  recA Streptococcus pneumoniae Rx1

59.829

98.873

0.592
  recA Streptococcus pneumoniae R6

59.829

98.873

0.592
  recA Streptococcus pneumoniae D39

59.829

98.873

0.592
  recA Streptococcus pneumoniae TIGR4

59.829

98.873

0.592
  recA Helicobacter pylori strain NCTC11637

63.303

92.113

0.583
  recA Helicobacter pylori 26695

62.997

92.113

0.58
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.636

89.859

0.572
  recA Streptococcus mitis SK321

62.229

90.986

0.566
  recA Streptococcus mitis NCTC 12261

61.92

90.986

0.563
  recA Lactococcus lactis subsp. cremoris KW2

61.92

90.986

0.563
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

91.549

0.563
  recA Streptococcus mutans UA159

61.231

91.549

0.561
  recA Streptococcus pyogenes NZ131

61.231

91.549

0.561
  recA Bacillus subtilis subsp. subtilis str. 168

61.682

90.423

0.558
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.337

93.521

0.555
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.436

90.423

0.546