Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LJY09_RS08585 Genome accession   NZ_CP086208
Coordinates   1690272..1691309 (+) Length   345 a.a.
NCBI ID   WP_028413795.1    Uniprot ID   A0AAX6BHP7
Organism   Priestia sp. J2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1685272..1696309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJY09_RS08565 - 1686327..1687433 (+) 1107 WP_028413799.1 HesA/MoeB/ThiF family protein -
  LJY09_RS08570 - 1687454..1688689 (+) 1236 WP_372454547.1 MFS transporter -
  LJY09_RS08575 - 1688957..1689391 (-) 435 WP_028413797.1 DUF2269 family protein -
  LJY09_RS08580 - 1689410..1689760 (-) 351 WP_028413796.1 ASCH domain-containing protein -
  LJY09_RS08585 recA 1690272..1691309 (+) 1038 WP_028413795.1 recombinase RecA Machinery gene
  LJY09_RS08590 - 1691661..1692134 (-) 474 WP_028413794.1 hypothetical protein -
  LJY09_RS08595 - 1692339..1692791 (-) 453 WP_047751219.1 VOC family protein -
  LJY09_RS08600 - 1693076..1693579 (+) 504 WP_028413792.1 DinB family protein -
  LJY09_RS27825 - 1694199..1694408 (-) 210 WP_081732881.1 VanZ family protein -
  LJY09_RS08605 - 1694725..1694874 (+) 150 WP_155017187.1 hypothetical protein -
  LJY09_RS08610 - 1695212..1696147 (-) 936 WP_028413791.1 cation diffusion facilitator family transporter -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37576.53 Da        Isoelectric Point: 4.9146

>NTDB_id=623710 LJY09_RS08585 WP_028413795.1 1690272..1691309(+) (recA) [Priestia sp. J2]
MNDKQAALDMALKQIEKQFGTGSIIKMGEGTHTKVEASSSGSLALDIALGINGYPKGRIMEVYGPESSGKTTVSLHAIAE
VQKNGGRAAFIDAEHALDPVYARKLGVDIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPQKEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKLGNDIVGNKT
RIKVVKNKMAPPFRIAEVDIMYGEGISREGEILDIGSEVDIVQKSGSWFSYNGERLGQGRENAKVFLKENPEIREEIRKN
IIDFKYGNTDNDNDIDNDSDSENES

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=623710 LJY09_RS08585 WP_028413795.1 1690272..1691309(+) (recA) [Priestia sp. J2]
ATGAATGATAAACAAGCAGCACTAGATATGGCTCTAAAACAAATTGAAAAACAATTCGGTACAGGATCAATTATTAAGAT
GGGGGAAGGCACACATACAAAAGTTGAGGCATCTAGCTCAGGTTCATTAGCTTTAGATATCGCTCTTGGGATTAATGGTT
ATCCAAAAGGAAGAATCATGGAAGTGTACGGACCCGAAAGCTCAGGTAAAACAACAGTTTCCTTACATGCGATTGCAGAA
GTACAAAAAAATGGAGGTCGAGCTGCCTTTATTGATGCTGAACACGCACTTGATCCAGTTTACGCAAGAAAACTAGGTGT
AGATATTGATGAGTTACTGTTATCTCAACCAGATACTGGTGAGCAGGCACTTGAAATTGCTGAAGCATTAGTTAGAAGTG
GTGCTGTAGATATTATTGTTGTTGACTCAGTAGCAGCATTAGTTCCTCAAAAAGAAATTGAGGGAGAAATGGGAGATTCT
CACGTAGGTCTACAAGCTCGTTTGATGTCTCAAGCCCTTCGTAAACTATCTGGAGCAATTAATAAGTCTAAAACCATTGC
TATCTTCATCAACCAAATCCGGGAGAAGGTAGGCGTTATGTTTGGAAATCCTGAAACAACGCCAGGCGGAAGAGCGCTAA
AATTCTATTCTTCCGTTCGCCTTGAGGTTCGCCGCGCTGAACAACTTAAACTGGGAAATGACATAGTTGGTAACAAAACA
AGAATTAAAGTAGTCAAAAATAAGATGGCACCTCCTTTCCGCATTGCTGAAGTAGATATTATGTATGGAGAAGGTATCTC
AAGAGAAGGAGAAATCTTAGATATTGGTTCTGAAGTAGATATTGTTCAAAAGTCTGGATCTTGGTTTTCTTATAATGGGG
AACGTTTAGGGCAGGGACGAGAAAACGCTAAGGTTTTCTTAAAAGAAAACCCTGAAATCAGAGAAGAAATTAGAAAAAAC
ATTATTGATTTTAAATATGGTAATACTGACAACGATAATGATATTGATAACGATAGCGATAGTGAAAACGAAAGCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.477

95.942

0.791
  recA Latilactobacillus sakei subsp. sakei 23K

72.34

95.362

0.69
  recA Streptococcus mutans UA159

65.23

100

0.658
  recA Streptococcus pneumoniae R6

65.318

100

0.655
  recA Streptococcus pneumoniae TIGR4

65.318

100

0.655
  recA Streptococcus pneumoniae Rx1

65.318

100

0.655
  recA Streptococcus pneumoniae D39

65.318

100

0.655
  recA Streptococcus mitis SK321

65.205

99.13

0.646
  recA Streptococcus pyogenes NZ131

68.21

93.913

0.641
  recA Streptococcus mitis NCTC 12261

68.421

93.623

0.641
  recA Neisseria gonorrhoeae MS11

66.355

93.043

0.617
  recA Neisseria gonorrhoeae MS11

66.355

93.043

0.617
  recA Neisseria gonorrhoeae strain FA1090

66.355

93.043

0.617
  recA Lactococcus lactis subsp. cremoris KW2

65.635

93.623

0.614
  recA Acinetobacter baumannii D1279779

65.204

92.464

0.603
  recA Vibrio cholerae strain A1552

64.89

92.464

0.6
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.89

92.464

0.6
  recA Acinetobacter baylyi ADP1

65.19

91.594

0.597
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.551

93.043

0.591
  recA Glaesserella parasuis strain SC1401

63.836

92.174

0.588
  recA Pseudomonas stutzeri DSM 10701

63.323

92.464

0.586
  recA Helicobacter pylori strain NCTC11637

63.125

92.754

0.586
  recA Ralstonia pseudosolanacearum GMI1000

65.798

88.986

0.586
  recA Helicobacter pylori 26695

62.813

92.754

0.583
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.043

94.493

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.696

93.333

0.548