Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LL918_RS04005 Genome accession   NZ_CP086193
Coordinates   884832..885866 (-) Length   344 a.a.
NCBI ID   WP_011408884.1    Uniprot ID   Q2P1M9
Organism   Xanthomonas oryzae strain GDV     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 879832..890866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL918_RS03990 (LL918_03995) csrA 880939..881151 (-) 213 WP_003481884.1 carbon storage regulator CsrA -
  LL918_RS03995 (LL918_04000) alaS 881291..883939 (-) 2649 WP_011259507.1 alanine--tRNA ligase -
  LL918_RS04000 (LL918_04005) recX 884041..884529 (-) 489 WP_012444556.1 recombination regulator RecX -
  LL918_RS04005 (LL918_04010) recA 884832..885866 (-) 1035 WP_011408884.1 recombinase RecA Machinery gene
  LL918_RS04010 (LL918_04015) lexA 886039..886680 (-) 642 WP_011408885.1 transcriptional repressor LexA -
  LL918_RS04015 (LL918_04020) ubiB 886769..888445 (-) 1677 WP_011408886.1 2-polyprenylphenol 6-hydroxylase -
  LL918_RS04020 (LL918_04025) - 888923..889417 (-) 495 WP_011259512.1 CinA family protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37202.79 Da        Isoelectric Point: 5.0776

>NTDB_id=623484 LL918_RS04005 WP_011408884.1 884832..885866(-) (recA) [Xanthomonas oryzae strain GDV]
MDENKKRALAAALSQIEKQFGKGSVMRMGDRVIEAVEVIPTGSLMLDIALGTGGLPKGRVVEIYGPESSGKTTLTLQAIA
QCQKLGGTAAFIDAEHALDPVYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSSSVDIVVIDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVEKAGAWYSYGDERIGQGKDNARTYLRDNPQVAVRL
EAELREKFQPAEAPREAGDDEEKE

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=623484 LL918_RS04005 WP_011408884.1 884832..885866(-) (recA) [Xanthomonas oryzae strain GDV]
ATGGACGAGAACAAGAAGCGCGCCCTTGCCGCCGCACTGAGCCAGATCGAAAAGCAATTCGGCAAGGGCTCGGTCATGCG
CATGGGCGACCGTGTCATCGAAGCGGTCGAAGTCATTCCGACCGGCTCGCTGATGCTGGATATCGCCCTGGGGACCGGCG
GCCTGCCGAAGGGGCGCGTAGTCGAAATCTACGGGCCGGAATCCTCGGGCAAGACCACCCTGACCCTGCAGGCGATTGCC
CAGTGTCAGAAGCTGGGCGGCACCGCCGCCTTCATCGACGCCGAGCACGCGCTGGACCCGGTCTATGCGGCCAAGCTGGG
TGTCAACGTCGACGATCTGCTGCTCTCGCAGCCGGATACCGGCGAGCAGGCGCTGGAAATTGCCGACATGCTGGTGCGTT
CAAGCTCGGTGGACATCGTGGTGATCGACTCGGTTGCCGCACTGACCCCGAAGGCAGAAATCGAAGGCGAAATGGGCGAC
CAGCTGCCGGGCCTGCAGGCTCGCCTGATGAGCCAGGCGTTGCGCAAGCTTACCGGCAACATCAAGCGCTCCAACACGCT
GGTGGTCTTCATCAATCAGCTGCGCATGAAGATCGGCGTCATGATGCCGGGCCAGAGCCCGGAAGTGACCACCGGCGGCA
ATGCCTTGAAGTTCTACGCCTCGGTGCGTCTGGACATCCGTCGTATCGGCGCAATCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCAAGATCAAGGTGGTCAAGAACAAGTTGGCGCCTCCGTTCAAGCAGGTCGTGACCGAAATCCTGTACGGCGA
AGGCATCAGCCGCGAAGGCGAATTGATCGATATGGGCGTGGAAGCCAAGCTGGTTGAAAAGGCCGGCGCCTGGTACAGCT
ACGGCGATGAGCGCATCGGGCAGGGCAAGGACAATGCGCGGACTTACCTGCGCGACAACCCGCAGGTTGCGGTCCGGCTG
GAAGCCGAACTGCGCGAGAAGTTCCAGCCTGCCGAAGCGCCGCGCGAAGCCGGCGACGACGAAGAGAAGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2P1M9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

69.767

100

0.698
  recA Pseudomonas stutzeri DSM 10701

70.623

97.965

0.692
  recA Ralstonia pseudosolanacearum GMI1000

75.719

90.988

0.689
  recA Acinetobacter baumannii D1279779

71.341

95.349

0.68
  recA Vibrio cholerae strain A1552

71.166

94.767

0.674
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.166

94.767

0.674
  recA Neisseria gonorrhoeae MS11

69.018

94.767

0.654
  recA Neisseria gonorrhoeae MS11

69.018

94.767

0.654
  recA Neisseria gonorrhoeae strain FA1090

69.018

94.767

0.654
  recA Glaesserella parasuis strain SC1401

68.111

93.895

0.64
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.874

97.093

0.61
  recA Latilactobacillus sakei subsp. sakei 23K

61.377

97.093

0.596
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.722

92.151

0.587
  recA Bacillus subtilis subsp. subtilis str. 168

61.846

94.477

0.584
  recA Streptococcus pneumoniae D39

60.976

95.349

0.581
  recA Streptococcus pneumoniae TIGR4

60.976

95.349

0.581
  recA Streptococcus mitis SK321

60.976

95.349

0.581
  recA Streptococcus pneumoniae R6

60.976

95.349

0.581
  recA Streptococcus pneumoniae Rx1

60.976

95.349

0.581
  recA Streptococcus mitis NCTC 12261

60.671

95.349

0.578
  recA Helicobacter pylori strain NCTC11637

59.94

96.512

0.578
  recA Streptococcus pyogenes NZ131

60.303

95.93

0.578
  recA Helicobacter pylori 26695

59.639

96.512

0.576
  recA Streptococcus mutans UA159

60

95.93

0.576
  recA Lactococcus lactis subsp. cremoris KW2

59.692

94.477

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.485

95.93

0.561