Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LK437_RS06125 Genome accession   NZ_CP085962
Coordinates   1242286..1243323 (+) Length   345 a.a.
NCBI ID   WP_004319686.1    Uniprot ID   -
Organism   Campylobacter rectus strain FDAARGOS_1549     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1237286..1248323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK437_RS12735 (LK437_06090) - 1237631..1237858 (-) 228 WP_050771497.1 hypothetical protein -
  LK437_RS12740 - 1237873..1238001 (-) 129 WP_257792183.1 hypothetical protein -
  LK437_RS12745 (LK437_06095) - 1237988..1238113 (-) 126 WP_227932326.1 alpha/beta hydrolase fold domain-containing protein -
  LK437_RS06100 (LK437_06100) - 1238481..1238882 (-) 402 WP_039888233.1 DUF805 domain-containing protein -
  LK437_RS06105 (LK437_06105) - 1239055..1239840 (-) 786 WP_004319783.1 UDP-N-acetylmuramate dehydrogenase -
  LK437_RS06110 (LK437_06110) fliQ 1239837..1240103 (-) 267 WP_002953589.1 flagellar biosynthesis protein FliQ -
  LK437_RS06115 (LK437_06115) - 1240103..1240969 (-) 867 WP_171992760.1 menaquinone biosynthesis family protein -
  LK437_RS06120 (LK437_06120) - 1241084..1242178 (+) 1095 WP_124850399.1 DNA adenine methylase -
  LK437_RS06125 (LK437_06125) recA 1242286..1243323 (+) 1038 WP_004319686.1 recombinase RecA Machinery gene
  LK437_RS06130 (LK437_06130) eno 1243337..1244587 (+) 1251 WP_004319704.1 phosphopyruvate hydratase -
  LK437_RS06135 (LK437_06135) - 1244584..1244850 (+) 267 WP_004319746.1 septum formation initiator family protein -
  LK437_RS06140 (LK437_06140) - 1244886..1245626 (+) 741 WP_039888234.1 AMIN domain-containing protein -
  LK437_RS06145 (LK437_06145) - 1245676..1245831 (-) 156 WP_004319687.1 hypothetical protein -
  LK437_RS06150 (LK437_06150) - 1246068..1246886 (-) 819 WP_004319757.1 hypothetical protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37070.36 Da        Isoelectric Point: 5.0499

>NTDB_id=621680 LK437_RS06125 WP_004319686.1 1242286..1243323(+) (recA) [Campylobacter rectus strain FDAARGOS_1549]
MEADKKKALDLALKQIDKVFGKGSIVRLGDVEIEPIDAVSTGSLGLDLALGVGGIPKGRIIEIYGPESSGKTTLTLHIIA
ECQKAGGTCAFVDAEHALDVKYASNLGVDTDNLYVSQPDFGEQALEIVENLARSGAIDLIVVDSVAALTPKSEIEGDMGD
QHVGLQARLMSQALRKLAGVVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKIATLKQNDEPIGN
RTKVKVVKNKVAPPFKVAEFDIMFGEGVSHEGEIIDYGVSLDIVDKSGAWFSYKETKLGQGKENSKAFLKEHPEIVSEIV
SAIKSSMGIEHIINNAGKDTEEDND

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=621680 LK437_RS06125 WP_004319686.1 1242286..1243323(+) (recA) [Campylobacter rectus strain FDAARGOS_1549]
ATGGAAGCGGATAAGAAAAAAGCGCTTGATCTCGCGCTAAAACAGATCGATAAGGTATTTGGCAAAGGCTCTATCGTGCG
TCTTGGCGATGTGGAGATAGAGCCCATAGATGCGGTATCTACGGGCTCACTCGGACTTGACTTGGCTCTTGGCGTCGGCG
GCATACCAAAAGGCAGGATAATTGAAATCTATGGCCCGGAGAGCTCGGGAAAGACGACGCTCACGCTTCATATCATCGCC
GAGTGTCAAAAAGCGGGCGGAACGTGCGCATTCGTGGATGCCGAGCATGCGCTAGACGTCAAATACGCGTCAAATTTGGG
CGTAGATACGGACAATCTCTATGTCAGCCAGCCGGACTTCGGCGAGCAGGCGCTTGAGATCGTGGAGAATTTAGCCAGAA
GCGGCGCGATCGATCTTATCGTCGTAGATAGCGTCGCGGCGCTCACGCCAAAAAGCGAAATCGAGGGCGATATGGGCGAT
CAGCACGTAGGCCTGCAAGCGCGCCTGATGAGCCAAGCGCTGCGTAAGCTCGCGGGCGTCGTGCACAAGATGAACACGAC
CGTGATCTTTATCAACCAAATTCGTATGAAAATCGGCGCGATGGGTTACGGCACTCCTGAAACGACGACCGGCGGCAACG
CGCTTAAATTTTACGCTTCAGTGCGCCTAGACGTGCGAAAAATCGCTACGCTAAAGCAAAACGACGAGCCTATCGGCAAC
CGCACGAAGGTCAAAGTCGTGAAAAACAAGGTCGCGCCCCCATTTAAAGTAGCGGAATTTGATATAATGTTCGGCGAGGG
AGTGAGCCACGAAGGCGAGATCATCGACTATGGCGTAAGCCTTGATATCGTGGATAAAAGCGGTGCATGGTTTAGCTACA
AAGAGACGAAACTAGGGCAGGGCAAGGAAAATTCTAAAGCGTTTTTAAAAGAACATCCCGAAATAGTATCTGAAATAGTT
TCAGCGATAAAGAGCTCGATGGGTATTGAACATATTATCAATAATGCAGGCAAAGATACCGAAGAAGATAACGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

82.216

99.42

0.817
  recA Helicobacter pylori strain NCTC11637

77.744

95.072

0.739
  recA Helicobacter pylori 26695

77.439

95.072

0.736
  recA Acinetobacter baylyi ADP1

64.451

100

0.646
  recA Neisseria gonorrhoeae strain FA1090

64.706

98.551

0.638
  recA Neisseria gonorrhoeae MS11

64.706

98.551

0.638
  recA Neisseria gonorrhoeae MS11

64.706

98.551

0.638
  recA Ralstonia pseudosolanacearum GMI1000

66.261

95.362

0.632
  recA Acinetobacter baumannii D1279779

65.749

94.783

0.623
  recA Glaesserella parasuis strain SC1401

65.635

93.623

0.614
  recA Bacillus subtilis subsp. subtilis str. 168

64.438

95.362

0.614
  recA Pseudomonas stutzeri DSM 10701

64.526

94.783

0.612
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.333

95.652

0.606
  recA Vibrio cholerae strain A1552

63.95

92.464

0.591
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.95

92.464

0.591
  recA Streptococcus pneumoniae D39

58.501

100

0.588
  recA Streptococcus pneumoniae Rx1

58.501

100

0.588
  recA Streptococcus pneumoniae R6

58.501

100

0.588
  recA Streptococcus pneumoniae TIGR4

58.501

100

0.588
  recA Streptococcus mitis NCTC 12261

59.517

95.942

0.571
  recA Streptococcus mitis SK321

59.215

95.942

0.568
  recA Streptococcus pyogenes NZ131

59.574

95.362

0.568
  recA Lactococcus lactis subsp. cremoris KW2

58.912

95.942

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.199

91.884

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

58.663

95.362

0.559
  recA Streptococcus mutans UA159

58.182

95.652

0.557