Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VAPA_RS26530 Genome accession   NC_022247
Coordinates   5683186..5684304 (-) Length   372 a.a.
NCBI ID   WP_021013078.1    Uniprot ID   T1XJZ3
Organism   Variovorax paradoxus B4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5678186..5689304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAPA_RS26505 (VAPA_1c53980) - 5678677..5679363 (-) 687 WP_021013074.1 TerC family protein -
  VAPA_RS26510 (VAPA_1c53990) sucD 5679464..5680357 (-) 894 WP_021013075.1 succinate--CoA ligase subunit alpha -
  VAPA_RS26515 (VAPA_1c54000) sucC 5680368..5681534 (-) 1167 WP_015867931.1 ADP-forming succinate--CoA ligase subunit beta -
  VAPA_RS26520 (VAPA_1c54010) argC 5681741..5682664 (+) 924 WP_021013076.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  VAPA_RS26525 (VAPA_1c54020) recX 5682706..5683158 (-) 453 WP_021013077.1 recombination regulator RecX -
  VAPA_RS26530 (VAPA_1c54030) recA 5683186..5684304 (-) 1119 WP_021013078.1 recombinase RecA Machinery gene
  VAPA_RS26535 (VAPA_1c54040) - 5684451..5684936 (+) 486 WP_021013079.1 MarR family winged helix-turn-helix transcriptional regulator -
  VAPA_RS26540 (VAPA_1c54050) - 5685002..5685673 (+) 672 WP_021013080.1 response regulator transcription factor -
  VAPA_RS26545 (VAPA_1c54060) - 5685716..5687161 (+) 1446 WP_021013081.1 sensor histidine kinase -
  VAPA_RS26550 (VAPA_1c54070) - 5687174..5687362 (-) 189 WP_021013082.1 hypothetical protein -
  VAPA_RS26555 (VAPA_1c54080) - 5687374..5688198 (-) 825 WP_021013083.1 biotin--[acetyl-CoA-carboxylase] ligase -
  VAPA_RS26560 (VAPA_1c54090) - 5688201..5688830 (-) 630 WP_021013084.1 SET domain-containing protein -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 39554.44 Da        Isoelectric Point: 5.2297

>NTDB_id=61943 VAPA_RS26530 WP_021013078.1 5683186..5684304(-) (recA) [Variovorax paradoxus B4]
MDALVKGTSISVAGSEKAKALQAALAQIEKQFGKGTIMRLGEGEALEDVQVVSTGSLGLDIALGVGGLPRGRVIEIYGPE
SSGKTTLTLQVIAEMQKQAGTCAFVDAEHALDVQYAQKLGVNLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAA
LTPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRI
GTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVTAKILDKSGAWYAYNGEKIGQGRDNAREF
LRENPELSREIENKVRESLGIPLLAADASAPAPEKAEKPAKAAKADKADKGE

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=61943 VAPA_RS26530 WP_021013078.1 5683186..5684304(-) (recA) [Variovorax paradoxus B4]
ATGGACGCACTCGTCAAAGGCACCAGCATCTCGGTCGCAGGCAGCGAAAAGGCCAAGGCACTGCAGGCCGCGCTGGCGCA
GATCGAAAAGCAGTTCGGCAAGGGCACGATCATGCGGCTCGGCGAGGGCGAGGCGCTCGAAGACGTCCAGGTGGTTTCCA
CCGGCTCGCTGGGCCTGGACATCGCGCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTGATCGAAATCTACGGCCCGGAA
TCCTCGGGCAAGACCACGCTCACGCTGCAGGTCATCGCCGAGATGCAGAAGCAGGCCGGCACCTGCGCCTTCGTCGATGC
CGAGCACGCGCTCGACGTGCAGTACGCCCAGAAGCTCGGCGTGAACCTGTCCGACCTGCTCATCAGCCAGCCCGACACCG
GCGAGCAGGCGCTCGAAATCGTCGATTCGCTGGTGCGCTCGGGCGCCGTCGACCTGATCGTGGTCGACTCGGTCGCCGCC
CTCACGCCCAAGGCCGAAATCGAAGGCGAAATGGGCGACTCGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCT
GCGCAAGCTCACCGCCACCATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGA
TGTTCGGCTCGCCCGAAACCACCACCGGCGGCAATGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATC
GGCACCATCAAGAAGGGCGACGAGGCCATCGGCAACGAAACCAAGGTCAAGGTGGTGAAGAACAAGGTGTCGCCCCCGTT
CAAGACGGCCGAGTTCGACATCCTGTTCGGCGAAGGCATCAGCCGCGAAGGCGAGATCATCGACATGGGCGTGACCGCCA
AGATCCTCGACAAGTCGGGCGCCTGGTACGCCTACAACGGCGAAAAAATCGGCCAGGGCCGCGACAACGCCCGCGAGTTC
CTGCGCGAGAACCCCGAGCTGTCGCGCGAGATCGAGAACAAGGTGCGCGAGTCGCTGGGCATTCCGCTGCTGGCGGCCGA
TGCCAGCGCTCCCGCCCCCGAAAAGGCCGAGAAGCCCGCGAAGGCGGCCAAGGCCGACAAAGCCGACAAGGGCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T1XJZ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.072

85.753

0.712
  recA Pseudomonas stutzeri DSM 10701

69.653

93.011

0.648
  recA Acinetobacter baylyi ADP1

70.262

92.204

0.648
  recA Neisseria gonorrhoeae MS11

68.895

92.473

0.637
  recA Neisseria gonorrhoeae MS11

68.895

92.473

0.637
  recA Neisseria gonorrhoeae strain FA1090

68.895

92.473

0.637
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.231

90.86

0.629
  recA Vibrio cholerae strain A1552

69.231

90.86

0.629
  recA Acinetobacter baumannii D1279779

72.136

86.828

0.626
  recA Glaesserella parasuis strain SC1401

71.296

87.097

0.621
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.405

87.634

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.282

90.591

0.591
  recA Helicobacter pylori strain NCTC11637

65.644

87.634

0.575
  recA Helicobacter pylori 26695

65.644

87.634

0.575
  recA Bacillus subtilis subsp. subtilis str. 168

64.832

87.903

0.57
  recA Latilactobacillus sakei subsp. sakei 23K

63.03

88.71

0.559
  recA Streptococcus pyogenes NZ131

62.236

88.978

0.554
  recA Streptococcus mutans UA159

62.048

89.247

0.554
  recA Streptococcus pneumoniae Rx1

61.747

89.247

0.551
  recA Streptococcus pneumoniae D39

61.747

89.247

0.551
  recA Streptococcus pneumoniae R6

61.747

89.247

0.551
  recA Streptococcus pneumoniae TIGR4

61.747

89.247

0.551
  recA Lactococcus lactis subsp. cremoris KW2

61.446

89.247

0.548
  recA Streptococcus mitis SK321

61.446

89.247

0.548
  recA Streptococcus mitis NCTC 12261

61.446

89.247

0.548
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.682

86.29

0.532

Multiple sequence alignment