Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LJU29_RS08145 Genome accession   NZ_CP085684
Coordinates   1841997..1843061 (+) Length   354 a.a.
NCBI ID   WP_004657925.1    Uniprot ID   A0A7Z6UBZ4
Organism   Pseudomonas ficuserectae strain ZJDX-003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1836997..1848061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJU29_RS08125 fdxA 1837767..1838090 (-) 324 WP_004657930.1 ferredoxin FdxA -
  LJU29_RS08130 mutS 1838350..1840917 (-) 2568 WP_257112701.1 DNA mismatch repair protein MutS -
  LJU29_RS08135 - 1841191..1841319 (+) 129 WP_255872123.1 hypothetical protein -
  LJU29_RS08140 - 1841388..1841903 (+) 516 WP_257112027.1 CinA family protein -
  LJU29_RS08145 recA 1841997..1843061 (+) 1065 WP_004657925.1 recombinase RecA Machinery gene
  LJU29_RS08150 recX 1843067..1843534 (+) 468 WP_005743450.1 recombination regulator RecX -
  LJU29_RS08155 - 1843539..1844660 (-) 1122 WP_002554686.1 LOG family protein -
  LJU29_RS08160 - 1844854..1845270 (-) 417 WP_002554685.1 quorum-sensing-regulated virulence factor family protein -
  LJU29_RS08165 - 1845550..1846260 (+) 711 WP_257112028.1 tRNA-uridine aminocarboxypropyltransferase -
  LJU29_RS08170 erdR 1846506..1847153 (+) 648 WP_002554683.1 response regulator transcription factor ErdR -
  LJU29_RS08175 - 1847237..1847602 (+) 366 WP_002554682.1 diacylglycerol kinase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37700.33 Da        Isoelectric Point: 5.8081

>NTDB_id=619282 LJU29_RS08145 WP_004657925.1 1841997..1843061(+) (recA) [Pseudomonas ficuserectae strain ZJDX-003]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEIVDLAVLHGFVEKSGAWYSYQGSKIGQGKANSAKFLADNPEICKALEK
QIRDKLLTPGVDTKAVGSREAAVADDMAEADADI

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=619282 LJU29_RS08145 WP_004657925.1 1841997..1843061(+) (recA) [Pseudomonas ficuserectae strain ZJDX-003]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCTTGGGTCAGATCGAGCGTCAGTTCGGTAAAGGTGCCGTGATGCG
CATGGGCGACCATGATCGCCAGGCTATTCCTGCCATCTCCACCGGTTCGCTGGGTCTGGATATCGCACTGGGCATCGGCG
GTCTGCCGAAAGGCCGGATCGTGGAAATCTACGGTCCAGAGTCTTCCGGTAAAACCACGCTGACGTTGTCGGTTATCGCG
CAAGCCCAGAAAATGGGTGCTACCTGTGCGTTTGTCGACGCCGAGCACGCGCTTGATCCGGAATACGCCGGCAAACTGGG
CGTCAATGTCGACGACCTGCTGGTTTCGCAGCCGGATACCGGTGAGCAGGCGCTTGAAATCACCGACATGCTGGTACGTT
CCAACGCCATCGACGTCATCGTTGTCGACTCCGTTGCTGCGCTGGTGCCTAAGGCAGAGATCGAAGGCGAAATGGGCGAC
ATGCACGTGGGTCTGCAGGCGCGTCTGATGTCGCAGGCACTGCGCAAGATCACCGGCAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAAATCGGTGTGATGTTCGGCAGCCCGGAAACCACTACCGGTGGTAACGCTC
TGAAGTTCTACGCTTCGGTACGTCTGGACATCCGCCGTACAGGCGCAGTGAAAGAAGGCGACGAGGTTGTCGGCAGCGAA
ACCCGCGTCAAGGTCGTGAAGAACAAGGTGGCTCCGCCATTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGTAT
CTACCTGAACGGCGAAATCGTCGATCTGGCCGTGCTGCATGGCTTTGTCGAGAAGTCCGGTGCCTGGTACAGCTACCAAG
GCAGCAAGATCGGTCAGGGTAAAGCCAACTCGGCCAAGTTCCTGGCAGATAACCCGGAAATCTGCAAAGCGCTCGAGAAG
CAGATTCGCGACAAGTTGCTCACCCCTGGTGTCGACACCAAAGCTGTCGGTTCCCGCGAAGCTGCCGTTGCTGATGATAT
GGCCGAAGCAGACGCTGATATCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z6UBZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

87.464

99.153

0.867
  recA Acinetobacter baylyi ADP1

73.729

100

0.737
  recA Acinetobacter baumannii D1279779

75.904

93.785

0.712
  recA Vibrio cholerae strain A1552

71.47

98.023

0.701
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.47

98.023

0.701
  recA Glaesserella parasuis strain SC1401

71.513

95.198

0.681
  recA Ralstonia pseudosolanacearum GMI1000

69.617

95.763

0.667
  recA Neisseria gonorrhoeae MS11

71.914

91.525

0.658
  recA Neisseria gonorrhoeae MS11

71.914

91.525

0.658
  recA Neisseria gonorrhoeae strain FA1090

71.914

91.525

0.658
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.554

93.785

0.596
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.874

94.35

0.593
  recA Helicobacter pylori strain NCTC11637

62.08

92.373

0.573
  recA Helicobacter pylori 26695

61.468

92.373

0.568
  recA Streptococcus mitis NCTC 12261

57.143

98.87

0.565
  recA Bacillus subtilis subsp. subtilis str. 168

60.06

94.068

0.565
  recA Streptococcus mutans UA159

60.923

91.808

0.559
  recA Streptococcus pneumoniae Rx1

59.509

92.09

0.548
  recA Streptococcus pneumoniae D39

59.509

92.09

0.548
  recA Streptococcus pneumoniae R6

59.509

92.09

0.548
  recA Streptococcus pneumoniae TIGR4

59.509

92.09

0.548
  recA Streptococcus pyogenes NZ131

58.841

92.655

0.545
  recA Streptococcus mitis SK321

59.443

91.243

0.542
  recA Latilactobacillus sakei subsp. sakei 23K

59.502

90.678

0.54
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.025

91.525

0.531
  recA Lactococcus lactis subsp. cremoris KW2

56.656

91.243

0.517