Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LJU33_RS05370 Genome accession   NZ_CP085637
Coordinates   1110230..1111291 (+) Length   353 a.a.
NCBI ID   WP_000963141.1    Uniprot ID   A0A1L4IV26
Organism   Escherichia coli strain fECg99.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1105230..1116291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJU33_RS05340 (LJU33_05340) srlD 1105482..1106261 (-) 780 WP_001077358.1 sorbitol-6-phosphate dehydrogenase -
  LJU33_RS05345 (LJU33_05345) srlB 1106266..1106637 (-) 372 WP_000216210.1 PTS glucitol/sorbitol transporter subunit IIA -
  LJU33_RS05350 (LJU33_05350) srlE 1106648..1107607 (-) 960 WP_000148875.1 PTS glucitol/sorbitol transporter subunit IIB -
  LJU33_RS05355 (LJU33_05355) srlA 1107604..1108167 (-) 564 WP_000573321.1 PTS glucitol/sorbitol transporter subunit IIC -
  LJU33_RS05360 (LJU33_05360) mltB 1108423..1109508 (+) 1086 WP_001299653.1 lytic murein transglycosylase B -
  LJU33_RS05365 (LJU33_05365) pncC 1109653..1110150 (+) 498 WP_000132231.1 nicotinamide-nucleotide amidase -
  LJU33_RS05370 (LJU33_05370) recA 1110230..1111291 (+) 1062 WP_000963141.1 recombinase RecA Machinery gene
  LJU33_RS05375 (LJU33_05375) recX 1111534..1112034 (+) 501 WP_000140506.1 recombination regulator RecX -
  LJU33_RS05380 (LJU33_05380) alaS 1112162..1114792 (+) 2631 WP_000047176.1 alanine--tRNA ligase -
  LJU33_RS05385 (LJU33_05385) csrA 1115027..1115212 (+) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38031.41 Da        Isoelectric Point: 4.7573

>NTDB_id=619024 LJU33_RS05370 WP_000963141.1 1110230..1111291(+) (recA) [Escherichia coli strain fECg99.1]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEI
EKKVRELLLSNPNSTPDFSVDDSEDVAETNEDF

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=619024 LJU33_RS05370 WP_000963141.1 1110230..1111291(+) (recA) [Escherichia coli strain fECg99.1]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATTGAGAAACAATTTGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCTACCGGTTCGCTTTCACTGGATATCGCGCTTGGGG
CAGGTGGTCTGCCGATGGGCCGTATCGTCGAAATCTACGGACCGGAATCTTCCGGTAAAACCACGCTGACGCTGCAGGTG
ATCGCCGCAGCGCAGCGTGAAGGTAAAACCTGTGCGTTTATCGATGCTGAACACGCGCTGGACCCAATCTACGCACGTAA
ACTGGGCGTCGATATCGATAACCTGCTGTGCTCCCAGCCGGACACCGGCGAGCAGGCACTGGAAATCTGTGACGCCCTGG
CGCGTTCTGGCGCAGTAGACGTTATCGTCGTTGACTCCGTGGCGGCACTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGCGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAATCCGGAAACCACTACCGGTGGTA
ACGCGCTGAAATTCTACGCCTCTGTTCGTCTCGACATCCGTCGTATCGGCGCGGTGAAAGAGGGCGAAAACGTGGTGGGT
AGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATCGCTGCACCGTTTAAACAGGCTGAATTTCAGATCCTCTACGGCGA
AGGTATCAACTTCTACGGCGAACTGGTTGACCTGGGCGTAAAAGAGAAGCTGATCGAGAAAGCAGGCGCGTGGTACAGCT
ACAAAGGTGAGAAGATCGGTCAGGGTAAAGCGAATGCAACTGCCTGGCTGAAAGATAACCCGGAAACCGCGAAAGAGATC
GAGAAGAAAGTACGTGAGTTGCTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGACAGCGAAGACGTAGC
AGAAACTAACGAAGATTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L4IV26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.29

93.768

0.79
  recA Vibrio cholerae strain A1552

84.29

93.768

0.79
  recA Pseudomonas stutzeri DSM 10701

74.184

95.467

0.708
  recA Acinetobacter baumannii D1279779

74.085

92.918

0.688
  recA Glaesserella parasuis strain SC1401

69.741

98.3

0.686
  recA Acinetobacter baylyi ADP1

73.78

92.918

0.686
  recA Ralstonia pseudosolanacearum GMI1000

68.278

93.768

0.64
  recA Neisseria gonorrhoeae MS11

69.018

92.351

0.637
  recA Neisseria gonorrhoeae MS11

69.018

92.351

0.637
  recA Neisseria gonorrhoeae strain FA1090

69.018

92.351

0.637
  recA Streptococcus mitis SK321

60.286

99.15

0.598
  recA Streptococcus mitis NCTC 12261

60.286

99.15

0.598
  recA Streptococcus pneumoniae Rx1

60.345

98.584

0.595
  recA Streptococcus pneumoniae TIGR4

60.345

98.584

0.595
  recA Streptococcus pneumoniae R6

60.345

98.584

0.595
  recA Streptococcus pneumoniae D39

60.345

98.584

0.595
  recA Helicobacter pylori strain NCTC11637

61.721

95.467

0.589
  recA Helicobacter pylori 26695

61.424

95.467

0.586
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.654

91.785

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.661

94.334

0.572
  recA Streptococcus pyogenes NZ131

62.154

92.068

0.572
  recA Streptococcus mutans UA159

62.154

92.068

0.572
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

90.935

0.567
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

92.068

0.567
  recA Lactococcus lactis subsp. cremoris KW2

61.61

91.501

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

90.935

0.555