Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HWQ47_RS19075 Genome accession   NZ_CP085636
Coordinates   4393052..4394101 (-) Length   349 a.a.
NCBI ID   WP_269971794.1    Uniprot ID   -
Organism   Shewanella sp. MTB7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4388052..4399101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWQ47_RS19065 (HWQ47_19085) csrA 4389438..4389635 (-) 198 WP_012325942.1 carbon storage regulator CsrA -
  HWQ47_RS19070 (HWQ47_19090) alaS 4390093..4392717 (-) 2625 WP_269967625.1 alanine--tRNA ligase -
  HWQ47_RS19075 (HWQ47_19095) recA 4393052..4394101 (-) 1050 WP_269971794.1 recombinase RecA Machinery gene
  HWQ47_RS19080 (HWQ47_19100) mutS 4394432..4397011 (+) 2580 WP_269967626.1 DNA mismatch repair protein MutS -
  HWQ47_RS19085 (HWQ47_19105) rpoS 4397211..4398185 (-) 975 WP_269967627.1 RNA polymerase sigma factor RpoS -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37665.28 Da        Isoelectric Point: 5.0544

>NTDB_id=619008 HWQ47_RS19075 WP_269971794.1 4393052..4394101(-) (recA) [Shewanella sp. MTB7]
MKIDANKEKALNAVLSQIEKQFGKGSIMKLGENRSMDVETISTGSLSLDIALGAGGLPLGRIVEIYGPESSGKTTLTLEV
IAAAQREGRVCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQTNTMLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDREEVIG
NETRVKVVKNKIAAPFRQAEFQILYGQGINRTGELVDLGVTHKLVEKAGAWYSYKGDKIGQGRANAGKYLLENPAIADEI
DKTLREMLLTPAEPAIVDDNVDLETGEVF

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=619008 HWQ47_RS19075 WP_269971794.1 4393052..4394101(-) (recA) [Shewanella sp. MTB7]
ATGAAGATAGACGCGAACAAAGAGAAAGCACTTAACGCTGTTTTAAGCCAGATTGAAAAGCAGTTCGGTAAAGGCTCTAT
CATGAAGCTGGGTGAAAATCGCTCAATGGATGTTGAAACTATCTCTACTGGTTCACTCTCTTTAGATATTGCCTTAGGTG
CCGGCGGCCTTCCTTTAGGTCGTATTGTCGAGATTTATGGTCCTGAATCTTCGGGTAAAACAACTTTGACGCTCGAAGTG
ATTGCTGCGGCTCAACGTGAAGGTCGGGTATGTGCCTTTATCGATGCCGAACATGCGTTGGATCCAATATATGCGAAGAA
ACTGGGTGTGGATATTGATAACCTACTTTGTTCACAACCTGATACCGGTGAGCAAGCATTAGAAATTTGTGATGCACTAA
CACGCTCTGGTGCTGTCGATGTTATTGTTGTCGATTCGGTAGCGGCTTTAACACCAAAAGCTGAAATTGAAGGTGAGATT
GGTGATTCTCATATGGGTCTTGCTGCTCGTATGATGAGCCAAGCGATGCGTAAGCTTGCTGGTAACCTTAAGCAGACTAA
CACAATGCTTATCTTCATTAACCAAATCCGTATGAAGATTGGTGTGATGTTTGGTAACCCTGAAACTACAACGGGTGGTA
ATGCACTTAAGTTTTATGCTTCTGTTCGTCTCGATATTCGTCGTACCGGTGCAATTAAAGATCGTGAAGAAGTGATCGGT
AACGAAACCCGCGTAAAAGTGGTTAAGAACAAGATTGCAGCGCCATTTAGACAAGCAGAGTTCCAAATTCTATATGGTCA
AGGCATTAACCGCACTGGTGAGCTAGTTGACTTGGGCGTTACCCATAAACTGGTTGAAAAAGCGGGTGCTTGGTACAGCT
ATAAAGGTGACAAAATTGGTCAAGGCCGTGCCAATGCTGGTAAATATCTGCTAGAGAATCCTGCCATTGCTGATGAAATT
GATAAAACACTTAGAGAGATGTTATTAACACCGGCTGAACCAGCTATTGTTGATGATAATGTTGATCTAGAAACTGGTGA
AGTCTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

81.268

99.427

0.808
  recA Vibrio cholerae O1 biovar El Tor strain E7946

81.268

99.427

0.808
  recA Pseudomonas stutzeri DSM 10701

73.7

93.696

0.691
  recA Acinetobacter baylyi ADP1

73.03

94.556

0.691
  recA Acinetobacter baumannii D1279779

71.951

93.983

0.676
  recA Glaesserella parasuis strain SC1401

70.497

92.264

0.65
  recA Neisseria gonorrhoeae MS11

69.35

92.55

0.642
  recA Neisseria gonorrhoeae MS11

69.35

92.55

0.642
  recA Neisseria gonorrhoeae strain FA1090

69.35

92.55

0.642
  recA Ralstonia pseudosolanacearum GMI1000

70.159

90.258

0.633
  recA Streptococcus pneumoniae D39

63.72

93.983

0.599
  recA Streptococcus pneumoniae Rx1

63.72

93.983

0.599
  recA Streptococcus pneumoniae R6

63.72

93.983

0.599
  recA Streptococcus pneumoniae TIGR4

63.72

93.983

0.599
  recA Helicobacter pylori strain NCTC11637

60.819

97.994

0.596
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.303

93.696

0.593
  recA Streptococcus mitis NCTC 12261

63.11

93.983

0.593
  recA Helicobacter pylori 26695

60.526

97.994

0.593
  recA Streptococcus mitis SK321

62.5

93.983

0.587
  recA Streptococcus pyogenes NZ131

61.89

93.983

0.582
  recA Streptococcus mutans UA159

61.585

93.983

0.579
  recA Bacillus subtilis subsp. subtilis str. 168

62.112

92.264

0.573
  recA Lactococcus lactis subsp. cremoris KW2

60.366

93.983

0.567
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.182

94.269

0.567
  recA Latilactobacillus sakei subsp. sakei 23K

61.129

91.404

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

90.258

0.542