Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LJQ72_RS15940 Genome accession   NZ_CP085633
Coordinates   3531686..3532759 (-) Length   357 a.a.
NCBI ID   WP_014916321.1    Uniprot ID   -
Organism   Pectobacterium brasiliense strain TS20HJ1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3526686..3537759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJQ72_RS15925 (LJQ72_15925) csrA 3527870..3528055 (-) 186 WP_005972168.1 carbon storage regulator CsrA -
  LJQ72_RS15930 (LJQ72_15930) alaS 3528380..3531007 (-) 2628 WP_227527152.1 alanine--tRNA ligase -
  LJQ72_RS15935 (LJQ72_15935) recX 3531146..3531640 (-) 495 WP_205559408.1 recombination regulator RecX -
  LJQ72_RS15940 (LJQ72_15940) recA 3531686..3532759 (-) 1074 WP_014916321.1 recombinase RecA Machinery gene
  LJQ72_RS15945 (LJQ72_15945) pncC 3532867..3533361 (-) 495 WP_039523519.1 nicotinamide-nucleotide amidase -
  LJQ72_RS15950 (LJQ72_15950) - 3533586..3533921 (-) 336 WP_014916323.1 hypothetical protein -
  LJQ72_RS15955 (LJQ72_15955) - 3534403..3534891 (+) 489 WP_014916324.1 SRPBCC family protein -
  LJQ72_RS15960 (LJQ72_15960) - 3534974..3535648 (+) 675 WP_010307203.1 MarC family NAAT transporter -
  LJQ72_RS15965 (LJQ72_15965) - 3535829..3537427 (+) 1599 WP_227527153.1 sensor domain-containing diguanylate cyclase -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38260.73 Da        Isoelectric Point: 5.0716

>NTDB_id=618984 LJQ72_RS15940 WP_014916321.1 3531686..3532759(-) (recA) [Pectobacterium brasiliense strain TS20HJ1]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGKANACNFLKENPAIAAEL
DKKLREMLLHKGNELTPATAGNSHDEDEFAGEGNEEF

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=618984 LJQ72_RS15940 WP_014916321.1 3531686..3532759(-) (recA) [Pectobacterium brasiliense strain TS20HJ1]
ATGGCTATTGATGAGAACAAACAAAAGGCACTTGCGGCAGCACTGGGTCAAATCGAAAAGCAATTTGGTAAAGGTTCTAT
CATGCGGTTGGGCGAGGATCGCTCAATGGATGTTGAAACCATTTCTACAGGCTCTTTGTCCCTGGATATCGCTTTGGGCG
CCGGTGGTTTACCGATGGGGCGTATCGTTGAGATTTATGGCCCAGAATCTTCCGGTAAAACAACGCTGACCTTACAGGTT
ATTGCTGCCGCTCAACGCGAAGGCAAAACGTGTGCGTTTATCGATGCTGAGCATGCGCTGGACCCGATTTATGCGAAAAA
GCTTGGTGTAGATATCGATAACCTGCTGTGTTCTCAGCCGGACACTGGCGAGCAAGCGTTGGAGATCTGTGATGCATTAA
CGCGCTCTGGCGCGGTTGACGTTATCATCGTCGACTCCGTTGCGGCACTGACGCCGAAAGCAGAAATTGAAGGTGAAATC
GGCGACTCCCACATGGGGCTGGCTGCACGTATGATGAGCCAGGCTATGCGTAAACTGGCGGGTAACCTGAAGCAAGCCAA
TACGCTACTGATCTTCATTAACCAGATTCGTATGAAAATCGGTGTGATGTTCGGTAACCCTGAAACCACTACCGGTGGTA
ACGCTCTGAAGTTTTATGCTTCTGTTCGCCTGGATATTCGTCGTACTGGTGCAATCAAGGAAGGCGAAGAGGTTGTTGGC
AGCGAAACCCGTGTGAAAGTCGTGAAGAATAAAGTGGCAGCACCGTTCAAACAGGCTGAATTCCAAATTCTGTACGGCGA
AGGCATCAATATCCACGGTGAGTTGGTCGATCTGGGTGTGAAACACAAGCTGATCGAAAAAGCGGGTGCCTGGTATAGCT
ATAACGGCGACAAGATCGGCCAGGGTAAAGCAAATGCCTGTAATTTCCTGAAAGAGAACCCGGCGATTGCTGCGGAACTG
GATAAGAAATTGCGTGAAATGCTGCTGCATAAAGGCAATGAGCTGACGCCAGCCACCGCTGGAAATAGCCATGACGAAGA
TGAATTCGCTGGTGAAGGCAACGAAGAGTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

83.099

99.44

0.826
  recA Vibrio cholerae O1 biovar El Tor strain E7946

83.099

99.44

0.826
  recA Pseudomonas stutzeri DSM 10701

76.147

91.597

0.697
  recA Acinetobacter baylyi ADP1

70.809

96.919

0.686
  recA Acinetobacter baumannii D1279779

70.809

96.919

0.686
  recA Glaesserella parasuis strain SC1401

69.516

98.319

0.683
  recA Neisseria gonorrhoeae MS11

69.632

91.317

0.636
  recA Neisseria gonorrhoeae MS11

69.632

91.317

0.636
  recA Neisseria gonorrhoeae strain FA1090

69.632

91.317

0.636
  recA Ralstonia pseudosolanacearum GMI1000

70.418

87.115

0.613
  recA Streptococcus pneumoniae R6

60

99.44

0.597
  recA Streptococcus pneumoniae Rx1

60

99.44

0.597
  recA Streptococcus pneumoniae D39

60

99.44

0.597
  recA Streptococcus pneumoniae TIGR4

60

99.44

0.597
  recA Helicobacter pylori strain NCTC11637

62.997

91.597

0.577
  recA Helicobacter pylori 26695

62.691

91.597

0.574
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.08

91.597

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.299

93.838

0.566
  recA Streptococcus mitis SK321

62.539

90.476

0.566
  recA Streptococcus mitis NCTC 12261

62.539

90.476

0.566
  recA Streptococcus pyogenes NZ131

62.154

91.036

0.566
  recA Streptococcus mutans UA159

62.154

91.036

0.566
  recA Lactococcus lactis subsp. cremoris KW2

62.229

90.476

0.563
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

89.916

0.56
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

91.036

0.557
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.589

91.317

0.535