Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LCH97_RS01220 Genome accession   NZ_CP085530
Coordinates   236412..237476 (-) Length   354 a.a.
NCBI ID   WP_017510008.1    Uniprot ID   -
Organism   Vogesella sp. XCS3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 231412..242476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH97_RS01205 (LCH97_01205) - 232130..232969 (-) 840 WP_227302992.1 ABC transporter substrate-binding protein -
  LCH97_RS01210 (LCH97_01210) alaS 233118..235748 (-) 2631 WP_227302993.1 alanine--tRNA ligase -
  LCH97_RS01215 (LCH97_01215) recX 235948..236412 (-) 465 WP_227302994.1 recombination regulator RecX -
  LCH97_RS01220 (LCH97_01220) recA 236412..237476 (-) 1065 WP_017510008.1 recombinase RecA Machinery gene
  LCH97_RS01225 (LCH97_01225) hrcA 237719..238738 (+) 1020 WP_227302995.1 heat-inducible transcriptional repressor HrcA -
  LCH97_RS01230 (LCH97_01230) mltB 238785..239801 (+) 1017 WP_227302996.1 lytic murein transglycosylase B -
  LCH97_RS01235 (LCH97_01235) dnaX 239907..241847 (+) 1941 WP_227302997.1 DNA polymerase III subunit gamma/tau -
  LCH97_RS01240 (LCH97_01240) - 241853..242191 (+) 339 WP_227302998.1 YbaB/EbfC family nucleoid-associated protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38228.64 Da        Isoelectric Point: 4.8285

>NTDB_id=618850 LCH97_RS01220 WP_017510008.1 236412..237476(-) (recA) [Vogesella sp. XCS3]
MAERSEDKSKALSAALAQIEKQFGKGSIMRMSDNQITENLQVISTGSLGLDLALGVGGLPRGRVVEIYGPESSGKTTLCL
QVVAEAQKLGGTCAYIDAENALDPQYAQKLGVSVEDLLISQPDTGEQALEICDMLVRSGGVDVIVVDSVAALVPKAEIEG
EMGDSHVGLQARLMSQALRKLTGNIKRTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRMDIRRIGGIKKGEEI
IGNETRVKVVKNKVSPPFKQAGFDILYGEGISREGEIIELGVEHGFIDKSGAWYAYNGQKIGQGKDNTREWLKSNPAIAQ
EIERKIREAVGIKVEITEGKPDADEELLDDTFDA

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=618850 LCH97_RS01220 WP_017510008.1 236412..237476(-) (recA) [Vogesella sp. XCS3]
ATGGCAGAGCGTTCCGAAGACAAAAGCAAGGCGCTGAGTGCAGCGCTGGCGCAAATTGAAAAGCAGTTCGGCAAAGGCTC
GATCATGCGCATGAGCGACAACCAGATCACCGAGAACCTGCAAGTCATCAGCACCGGCTCGCTGGGTCTGGATCTGGCAC
TAGGCGTGGGTGGCCTGCCGCGTGGCCGCGTAGTAGAAATCTACGGCCCGGAATCGTCCGGTAAAACCACGCTGTGCCTG
CAGGTGGTTGCCGAAGCGCAAAAGCTGGGCGGCACCTGCGCCTATATCGACGCCGAAAACGCACTGGACCCGCAATACGC
TCAAAAACTGGGCGTATCGGTAGAAGACCTGCTGATCTCGCAGCCGGATACCGGAGAGCAGGCACTGGAAATCTGCGACA
TGCTGGTACGCTCCGGCGGCGTGGACGTGATCGTTGTGGACTCGGTTGCCGCCCTGGTACCCAAAGCCGAGATCGAAGGC
GAAATGGGTGACAGCCACGTAGGCCTGCAAGCCCGCCTGATGAGCCAGGCACTGCGCAAACTCACCGGCAATATCAAGCG
TACCAACACCCTGGTGGTATTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCG
GCGGTAACGCGCTGAAATTCTACGCTTCGGTGCGCATGGATATCCGCCGCATCGGCGGTATCAAGAAGGGTGAAGAAATC
ATCGGCAACGAAACCCGCGTGAAAGTGGTGAAGAACAAGGTATCGCCACCGTTCAAGCAGGCCGGTTTTGACATCCTGTA
CGGCGAAGGCATCAGCCGTGAAGGCGAAATCATCGAGCTGGGCGTAGAGCACGGCTTTATCGACAAGTCCGGTGCCTGGT
ACGCCTATAACGGCCAGAAAATCGGCCAGGGCAAGGACAACACCCGCGAATGGCTGAAATCCAACCCGGCCATTGCCCAG
GAAATCGAGCGCAAGATCCGCGAAGCCGTGGGCATCAAGGTAGAAATCACCGAAGGCAAGCCGGACGCTGACGAAGAGCT
GCTGGACGACACCTTCGACGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

78.107

95.48

0.746
  recA Neisseria gonorrhoeae MS11

78.107

95.48

0.746
  recA Neisseria gonorrhoeae strain FA1090

78.107

95.48

0.746
  recA Ralstonia pseudosolanacearum GMI1000

79.299

88.701

0.703
  recA Pseudomonas stutzeri DSM 10701

71.802

97.175

0.698
  recA Glaesserella parasuis strain SC1401

72.256

92.655

0.669
  recA Acinetobacter baylyi ADP1

68.035

96.328

0.655
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.207

91.243

0.65
  recA Vibrio cholerae strain A1552

71.207

91.243

0.65
  recA Acinetobacter baumannii D1279779

70.588

91.243

0.644
  recA Helicobacter pylori strain NCTC11637

63.848

96.893

0.619
  recA Helicobacter pylori 26695

63.848

96.893

0.619
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.281

96.61

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.772

94.35

0.602
  recA Latilactobacillus sakei subsp. sakei 23K

60.756

97.175

0.59
  recA Bacillus subtilis subsp. subtilis str. 168

62.883

92.09

0.579
  recA Streptococcus mutans UA159

57.507

99.718

0.573
  recA Lactococcus lactis subsp. cremoris KW2

59.697

93.22

0.556
  recA Streptococcus mitis NCTC 12261

57.602

96.61

0.556
  recA Streptococcus pneumoniae R6

58.182

93.22

0.542
  recA Streptococcus pneumoniae TIGR4

58.182

93.22

0.542
  recA Streptococcus pneumoniae D39

58.182

93.22

0.542
  recA Streptococcus pyogenes NZ131

58.182

93.22

0.542
  recA Streptococcus pneumoniae Rx1

58.182

93.22

0.542
  recA Streptococcus mitis SK321

57.879

93.22

0.54
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.622

92.655

0.534